Variant report

Variant	rs72701663
Chromosome Location	chr4:166293849-166293850
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166290374..166293892-chr4:166298191..166301332,3	MCF-7	breast:
2	chr4:166279128..166280930-chr4:166292985..166295203,2	K562	blood:

Variant related genes	Relation type
ENSG00000109472	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10517833	0.89[ASN][1000 genomes]
rs11726415	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11729568	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11730543	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11944540	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17046216	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17488289	0.89[ASN][1000 genomes]
rs17488436	0.89[ASN][1000 genomes]
rs17488534	0.89[ASN][1000 genomes]
rs17488569	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17488814	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17488835	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17488877	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17585396	0.89[ASN][1000 genomes]
rs17585550	0.89[ASN][1000 genomes]
rs1818471	0.89[ASN][1000 genomes]
rs1986031	0.89[ASN][1000 genomes]
rs36230153	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3901486	0.89[ASN][1000 genomes]
rs4353858	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4588420	0.89[ASN][1000 genomes]
rs55648903	0.89[ASN][1000 genomes]
rs55650232	0.89[ASN][1000 genomes]
rs56022310	0.89[ASN][1000 genomes]
rs56058696	0.89[ASN][1000 genomes]
rs56104713	0.89[ASN][1000 genomes]
rs56144732	0.89[ASN][1000 genomes]
rs56287687	0.89[ASN][1000 genomes]
rs56326646	0.89[ASN][1000 genomes]
rs56370618	0.89[ASN][1000 genomes]
rs56387271	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56407727	0.89[ASN][1000 genomes]
rs56410965	0.89[ASN][1000 genomes]
rs57162477	0.89[ASN][1000 genomes]
rs58426709	0.89[ASN][1000 genomes]
rs6829944	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6830103	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6831119	0.89[ASN][1000 genomes]
rs6853219	0.89[ASN][1000 genomes]
rs72699595	0.89[ASN][1000 genomes]
rs72699598	0.89[ASN][1000 genomes]
rs72701606	0.89[ASN][1000 genomes]
rs72701608	0.89[ASN][1000 genomes]
rs72701623	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72701624	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72701625	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72701638	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72701640	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72701655	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72701660	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7660728	0.80[AMR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166286800-166299400	Weak transcription	HMEC	breast
2	chr4:166287600-166296000	Weak transcription	Fetal Intestine Small	intestine
3	chr4:166293400-166298800	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links