Variant report

Variant	rs36230153
Chromosome Location	chr4:166299487-166299488
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr4:166299004-166301874	H1-neurons	neurons:	n/a	chr4:166300166-166300179 chr4:166299047-166299055 chr4:166300164-166300182
2	MXI1	chr4:166299094-166301418	SK-N-SH	brain:	n/a	n/a
3	JUND	chr4:166299423-166300536	SK-N-SH	brain:	n/a	chr4:166299945-166299956

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166298064..166301679-chr4:166306197..166309667,4	MCF-7	breast:
2	chr4:166298593..166300612-chr4:166306180..166307966,2	MCF-7	breast:

Variant related genes	Relation type
CPE	TF binding region
ENSG00000207559	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10517833	0.89[ASN][1000 genomes]
rs11726415	0.89[EUR][1000 genomes]
rs11729568	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11730543	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11944540	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17046216	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17488289	0.89[ASN][1000 genomes]
rs17488436	0.89[ASN][1000 genomes]
rs17488534	0.89[ASN][1000 genomes]
rs17488569	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17488814	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17488835	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17488877	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17585396	0.89[ASN][1000 genomes]
rs17585550	0.89[ASN][1000 genomes]
rs1818471	0.89[ASN][1000 genomes]
rs1986031	0.89[ASN][1000 genomes]
rs3901486	0.89[ASN][1000 genomes]
rs4353858	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4588420	0.89[ASN][1000 genomes]
rs55648903	0.89[ASN][1000 genomes]
rs55650232	0.89[ASN][1000 genomes]
rs56022310	0.89[ASN][1000 genomes]
rs56058696	0.89[ASN][1000 genomes]
rs56104713	0.89[ASN][1000 genomes]
rs56144732	0.89[ASN][1000 genomes]
rs56287687	0.89[ASN][1000 genomes]
rs56326646	0.89[ASN][1000 genomes]
rs56370618	0.89[ASN][1000 genomes]
rs56387271	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56407727	0.89[ASN][1000 genomes]
rs56410965	0.89[ASN][1000 genomes]
rs57162477	0.89[ASN][1000 genomes]
rs58426709	0.89[ASN][1000 genomes]
rs6829944	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6830103	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6831119	0.89[ASN][1000 genomes]
rs6853219	0.89[ASN][1000 genomes]
rs72699595	0.89[ASN][1000 genomes]
rs72699598	0.89[ASN][1000 genomes]
rs72701606	0.89[ASN][1000 genomes]
rs72701608	0.89[ASN][1000 genomes]
rs72701623	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72701624	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72701625	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72701638	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72701640	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72701655	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72701660	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72701663	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166298000-166302400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:166299000-166299600	Enhancers	Fetal Intestine Large	intestine
3	chr4:166299000-166299800	Flanking Active TSS	Brain Anterior Caudate	brain
4	chr4:166299000-166299800	Flanking Active TSS	Fetal Brain Female	brain
5	chr4:166299000-166300000	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:166299200-166299600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr4:166299200-166299600	Flanking Active TSS	Fetal Brain Male	brain
8	chr4:166299200-166299600	Enhancers	Fetal Intestine Small	intestine
9	chr4:166299200-166299600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr4:166299200-166299600	Enhancers	Fetal Stomach	stomach
11	chr4:166299200-166299800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr4:166299200-166299800	Active TSS	Skeletal Muscle Female	skeletal muscle
13	chr4:166299200-166300000	Flanking Active TSS	HepG2	liver
14	chr4:166299200-166301000	Active TSS	Colon Smooth Muscle	Colon
15	chr4:166299200-166301400	Active TSS	Rectal Smooth Muscle	rectum
16	chr4:166299200-166303200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr4:166299400-166299600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
18	chr4:166299400-166299600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
19	chr4:166299400-166299600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
20	chr4:166299400-166299600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr4:166299400-166299600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr4:166299400-166299600	Active TSS	Brain Inferior Temporal Lobe	brain
23	chr4:166299400-166299600	Bivalent Enhancer	Fetal Heart	heart
24	chr4:166299400-166299600	Flanking Active TSS	Fetal Kidney	kidney
25	chr4:166299400-166299600	Bivalent Enhancer	Fetal Muscle Leg	muscle
26	chr4:166299400-166299600	Enhancers	HMEC	breast
27	chr4:166299400-166299800	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr4:166299400-166299800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr4:166299400-166299800	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
30	chr4:166299400-166299800	Flanking Active TSS	Adipose Nuclei	Adipose
31	chr4:166299400-166299800	Flanking Active TSS	Brain Substantia Nigra	brain
32	chr4:166299400-166299800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
33	chr4:166299400-166300000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr4:166299400-166300000	Flanking Active TSS	Brain Angular Gyrus	brain
35	chr4:166299400-166300000	Flanking Active TSS	Brain Cingulate Gyrus	brain
36	chr4:166299400-166301000	Active TSS	Brain Germinal Matrix	brain
37	chr4:166299400-166301400	Active TSS	Stomach Smooth Muscle	stomach
38	chr4:166299400-166302200	Active TSS	Aorta	Aorta
39	chr4:166299400-166304000	Active TSS	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links