Variant report

Variant	rs17488835
Chromosome Location	chr4:166285131-166285132
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166284247..166286679-chr4:166288539..166290783,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10517833	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs11726415	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11729568	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11730543	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11944540	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1530043	1.00[CHB][hapmap]
rs17046216	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17488289	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs17488436	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs17488534	0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs17488569	0.88[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17488814	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17488877	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17585396	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs17585550	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs1818471	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs1986031	0.89[ASN][1000 genomes]
rs28678592	1.00[CHB][hapmap]
rs36230153	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3901486	0.89[ASN][1000 genomes]
rs4353858	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4588420	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs55648903	0.89[ASN][1000 genomes]
rs55650232	0.89[ASN][1000 genomes]
rs56022310	0.89[ASN][1000 genomes]
rs56058696	0.89[ASN][1000 genomes]
rs56104713	0.89[ASN][1000 genomes]
rs56144732	0.89[ASN][1000 genomes]
rs56287687	0.89[ASN][1000 genomes]
rs56326646	0.89[ASN][1000 genomes]
rs56370618	0.89[ASN][1000 genomes]
rs56387271	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56407727	0.89[ASN][1000 genomes]
rs56410965	0.89[ASN][1000 genomes]
rs57162477	0.89[ASN][1000 genomes]
rs58426709	0.89[ASN][1000 genomes]
rs6829944	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6830103	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6831119	0.89[ASN][1000 genomes]
rs6853219	0.89[ASN][1000 genomes]
rs72699595	0.89[ASN][1000 genomes]
rs72699598	0.89[ASN][1000 genomes]
rs72701606	0.89[ASN][1000 genomes]
rs72701608	0.89[ASN][1000 genomes]
rs72701623	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72701624	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72701625	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72701638	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72701640	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72701655	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72701660	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72701663	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166277600-166285400	Weak transcription	HepG2	liver
2	chr4:166281600-166285400	Weak transcription	HMEC	breast
3	chr4:166281600-166285800	Weak transcription	Hela-S3	cervix
4	chr4:166282600-166290800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:166282800-166286000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:166283600-166288600	Enhancers	Fetal Intestine Large	intestine
7	chr4:166284400-166287600	Enhancers	Fetal Intestine Small	intestine
8	chr4:166284800-166286000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:166284800-166286000	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr4:166284800-166286800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:166285000-166286000	Enhancers	Rectal Mucosa Donor 31	rectum

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