Variant report

Variant	rs17536786
Chromosome Location	chr18:25737146-25737147
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:25725957..25728565-chr18:25735891..25737665,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17536841	0.95[AFR][1000 genomes]
rs1944289	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55849882	0.93[AFR][1000 genomes]
rs7229198	1.00[AMR][1000 genomes]
rs7229523	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25717600-25753400	Weak transcription	Dnd41	blood
2	chr18:25726000-25739200	Weak transcription	HSMM	muscle
3	chr18:25726000-25745400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr18:25728000-25737400	Weak transcription	Fetal Lung	lung
5	chr18:25728200-25739200	Weak transcription	HepG2	liver
6	chr18:25728800-25754200	Weak transcription	HUVEC	blood vessel
7	chr18:25729200-25737800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr18:25729200-25739000	Weak transcription	A549	lung
9	chr18:25730000-25738000	Weak transcription	Fetal Stomach	stomach
10	chr18:25730200-25738000	Weak transcription	Aorta	Aorta
11	chr18:25730800-25738800	Enhancers	Brain Substantia Nigra	brain
12	chr18:25731000-25738000	Enhancers	Brain Angular Gyrus	brain
13	chr18:25731000-25738000	Enhancers	Brain Anterior Caudate	brain
14	chr18:25731800-25740600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr18:25732800-25737800	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr18:25733000-25738400	Weak transcription	Gastric	stomach
17	chr18:25733000-25741600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr18:25733600-25738200	Weak transcription	Osteobl	bone
19	chr18:25733600-25743400	Weak transcription	Fetal Brain Male	brain
20	chr18:25733800-25740200	Weak transcription	NH-A	brain
21	chr18:25734000-25737800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr18:25734000-25738200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr18:25734000-25743200	Weak transcription	Fetal Brain Female	brain
24	chr18:25734400-25738000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr18:25734400-25742200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr18:25734600-25738000	Enhancers	Brain Cingulate Gyrus	brain
27	chr18:25734600-25738600	Enhancers	Brain Hippocampus Middle	brain
28	chr18:25734600-25739200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr18:25734600-25748200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr18:25734800-25738200	Enhancers	Fetal Heart	heart
31	chr18:25734800-25749200	Weak transcription	Fetal Kidney	kidney
32	chr18:25735200-25737400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr18:25735600-25738200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr18:25735600-25741800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr18:25736000-25738200	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr18:25736000-25738600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr18:25736000-25738600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr18:25736000-25740600	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr18:25736000-25740600	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr18:25736000-25740600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr18:25736000-25742200	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr18:25736200-25737800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr18:25736200-25739000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr18:25736200-25739200	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr18:25736200-25740200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr18:25736400-25737400	Weak transcription	Brain Germinal Matrix	brain
47	chr18:25736400-25738000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr18:25736400-25738200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr18:25736600-25738400	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr18:25736600-25740200	Weak transcription	Right Ventricle	heart

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