Variant report

Variant	rs55849882
Chromosome Location	chr18:25756354-25756355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17494718	1.00[AMR][1000 genomes]
rs17495404	1.00[AMR][1000 genomes]
rs17536786	0.93[AFR][1000 genomes]
rs17536841	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17536996	1.00[AMR][1000 genomes]
rs1944289	0.93[AFR][1000 genomes]
rs7233193	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7240139	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv9622	chr18:25749905-26032816	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3425660	chr18:25756154-25759202	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25749800-25759200	Active TSS	Right Ventricle	heart
2	chr18:25752400-25759600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr18:25752600-25759200	Active TSS	Right Atrium	heart
4	chr18:25752800-25756600	Active TSS	Fetal Heart	heart
5	chr18:25753200-25758600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr18:25753400-25759600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr18:25753600-25758800	Active TSS	NH-A	brain
8	chr18:25753600-25759200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr18:25753800-25758800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr18:25754000-25758800	Active TSS	Fetal Kidney	kidney
11	chr18:25754000-25759200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr18:25754200-25756600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
13	chr18:25754200-25758600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr18:25754200-25758800	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr18:25754200-25759000	Active TSS	Brain Angular Gyrus	brain
16	chr18:25754200-25759000	Active TSS	Brain Cingulate Gyrus	brain
17	chr18:25754200-25759600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
18	chr18:25754400-25759200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr18:25754400-25759200	Active TSS	Brain Inferior Temporal Lobe	brain
20	chr18:25754600-25756600	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr18:25754600-25758600	Active TSS	Brain Hippocampus Middle	brain
22	chr18:25754600-25758600	Active TSS	HSMMtube	muscle
23	chr18:25754600-25758800	Active TSS	Brain Substantia Nigra	brain
24	chr18:25754600-25759400	Active TSS	ES-I3 Cell Line	embryonic stem cell
25	chr18:25754800-25756400	Bivalent/Poised TSS	HepG2	liver
26	chr18:25754800-25756600	Flanking Active TSS	HUVEC	blood vessel
27	chr18:25754800-25759000	Active TSS	Brain Anterior Caudate	brain
28	chr18:25755000-25756600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
29	chr18:25755000-25756600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
30	chr18:25755000-25756800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
31	chr18:25755000-25756800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr18:25755000-25757000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr18:25755000-25757400	Active TSS	Fetal Brain Male	brain
34	chr18:25755000-25758600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr18:25755000-25758600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr18:25755000-25759000	Active TSS	H9 Cell Line	embryonic stem cell
37	chr18:25755200-25756600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
38	chr18:25755200-25756600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
39	chr18:25755200-25756600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
40	chr18:25755200-25756600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
41	chr18:25755200-25756800	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr18:25755200-25756800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
43	chr18:25755200-25756800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr18:25755200-25756800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
45	chr18:25755200-25757000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
46	chr18:25755200-25758400	Active TSS	Muscle Satellite Cultured Cells	--
47	chr18:25755200-25758600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr18:25755200-25758600	Active TSS	A549	lung
49	chr18:25755200-25758600	Active TSS	NHLF	lung
50	chr18:25755200-25758800	Active TSS	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links