Variant report

Variant	rs17494718
Chromosome Location	chr18:25691922-25691923
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11564399	1.00[YRI][hapmap]
rs17494276	1.00[YRI][hapmap]
rs17494388	1.00[YRI][hapmap]
rs17495404	1.00[AMR][1000 genomes]
rs17536841	1.00[AMR][1000 genomes]
rs17536996	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs55849882	1.00[AMR][1000 genomes]
rs7233193	1.00[AMR][1000 genomes]
rs7240139	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25687200-25699800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr18:25687400-25693000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr18:25687400-25696800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr18:25687600-25693000	Enhancers	Liver	Liver
5	chr18:25687600-25694200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr18:25687800-25692400	Enhancers	Fetal Brain Female	brain
7	chr18:25687800-25693000	Enhancers	Brain Germinal Matrix	brain
8	chr18:25688000-25692800	Enhancers	Brain Hippocampus Middle	brain
9	chr18:25688000-25693200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr18:25688200-25693000	Enhancers	Brain Anterior Caudate	brain
11	chr18:25688200-25694000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr18:25688400-25692000	Enhancers	HSMM	muscle
13	chr18:25688400-25692200	Enhancers	NH-A	brain
14	chr18:25688400-25693000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr18:25689200-25692000	Enhancers	A549	lung
16	chr18:25689200-25692000	Weak transcription	HepG2	liver
17	chr18:25689800-25693000	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr18:25689800-25693000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr18:25689800-25695600	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr18:25690000-25692800	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr18:25690200-25695000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr18:25690200-25695000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr18:25690400-25692600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr18:25690800-25692200	Enhancers	Fetal Heart	heart
25	chr18:25690800-25695200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr18:25691000-25692000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr18:25691000-25692000	Weak transcription	Brain Angular Gyrus	brain
28	chr18:25691000-25692200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr18:25691000-25692200	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr18:25691000-25693800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr18:25691000-25693800	Enhancers	NHLF	lung
32	chr18:25691000-25696600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr18:25691200-25692000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr18:25691200-25692200	Enhancers	HSMMtube	muscle
35	chr18:25691200-25692600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr18:25691200-25694600	Weak transcription	Right Ventricle	heart
37	chr18:25691200-25695000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr18:25691200-25695000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr18:25691200-25695200	Weak transcription	Right Atrium	heart
40	chr18:25691400-25692000	Weak transcription	Brain Cingulate Gyrus	brain
41	chr18:25691400-25692000	Enhancers	HUVEC	blood vessel
42	chr18:25691400-25692200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr18:25691400-25692200	Weak transcription	Aorta	Aorta
44	chr18:25691400-25692200	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr18:25691400-25692200	Enhancers	Osteobl	bone
46	chr18:25691400-25692400	Enhancers	Fetal Intestine Small	intestine
47	chr18:25691400-25692600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr18:25691400-25692800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr18:25691400-25693200	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr18:25691400-25695000	Weak transcription	Left Ventricle	heart

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