Variant report

Variant	rs17536996
Chromosome Location	chr18:25759649-25759650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr18:25759623-25759655	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
CDH2	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11564399	1.00[YRI][hapmap]
rs17494276	1.00[YRI][hapmap]
rs17494388	1.00[YRI][hapmap]
rs17494718	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17495404	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17536841	1.00[AMR][1000 genomes]
rs55849882	1.00[AMR][1000 genomes]
rs7233193	1.00[AMR][1000 genomes]
rs7240139	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv9622	chr18:25749905-26032816	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25756600-25760800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr18:25756800-25759800	Active TSS	Fetal Brain Female	brain
3	chr18:25758600-25763800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr18:25758800-25759800	Enhancers	Brain Substantia Nigra	brain
5	chr18:25758800-25762400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr18:25758800-25763200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr18:25758800-25763600	Weak transcription	Liver	Liver
8	chr18:25758800-25763600	Weak transcription	HepG2	liver
9	chr18:25758800-25763600	Weak transcription	HSMMtube	muscle
10	chr18:25759000-25759800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr18:25759000-25763200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr18:25759000-25763600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr18:25759000-25763600	Weak transcription	HUVEC	blood vessel
14	chr18:25759000-25766000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr18:25759200-25759800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
16	chr18:25759200-25760000	Enhancers	A549	lung
17	chr18:25759200-25760200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr18:25759200-25760200	Enhancers	NH-A	brain
19	chr18:25759200-25761000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr18:25759200-25761800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr18:25759200-25762600	Weak transcription	Osteobl	bone
22	chr18:25759200-25763200	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr18:25759200-25763600	Weak transcription	Right Ventricle	heart
24	chr18:25759200-25765800	Weak transcription	Right Atrium	heart
25	chr18:25759200-25778000	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr18:25759400-25760200	Enhancers	Fetal Heart	heart
27	chr18:25759400-25763800	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr18:25759600-25759800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr18:25759600-25759800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
30	chr18:25759600-25759800	Bivalent Enhancer	Primary T cells from cord blood	blood
31	chr18:25759600-25759800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr18:25759600-25760400	Enhancers	H1 Cell Line	embryonic stem cell
33	chr18:25759600-25760400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
34	chr18:25759600-25761000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
35	chr18:25759600-25761600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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