Variant report

Variant	rs17495404
Chromosome Location	chr18:25754052-25754053
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17494718	1.00[AMR][1000 genomes]
rs17536841	1.00[AMR][1000 genomes]
rs17536996	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55849882	1.00[AMR][1000 genomes]
rs7233193	1.00[AMR][1000 genomes]
rs7240139	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv9622	chr18:25749905-26032816	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25728800-25754200	Weak transcription	HUVEC	blood vessel
2	chr18:25738800-25754200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr18:25742600-25754200	Weak transcription	Brain Angular Gyrus	brain
4	chr18:25742800-25755000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr18:25744800-25754200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr18:25749800-25759200	Active TSS	Right Ventricle	heart
7	chr18:25752000-25754200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr18:25752000-25754200	Active TSS	Fetal Brain Female	brain
9	chr18:25752000-25754600	Weak transcription	Brain Hippocampus Middle	brain
10	chr18:25752200-25754200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr18:25752200-25754200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr18:25752200-25754200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr18:25752200-25754200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr18:25752200-25754200	Weak transcription	Left Ventricle	heart
15	chr18:25752200-25755200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr18:25752400-25759600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr18:25752600-25755200	Flanking Active TSS	Liver	Liver
18	chr18:25752600-25759200	Active TSS	Right Atrium	heart
19	chr18:25752800-25756600	Active TSS	Fetal Heart	heart
20	chr18:25753000-25755400	Active TSS	Brain Germinal Matrix	brain
21	chr18:25753200-25756200	Active TSS	Cortex derived primary cultured neurospheres	brain
22	chr18:25753200-25758600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr18:25753400-25754200	Active TSS	Fetal Brain Male	brain
24	chr18:25753400-25754200	Weak transcription	A549	lung
25	chr18:25753400-25754400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
26	chr18:25753400-25754400	Enhancers	Osteobl	bone
27	chr18:25753400-25759600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr18:25753600-25758800	Active TSS	NH-A	brain
29	chr18:25753600-25759200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr18:25753800-25754200	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
31	chr18:25753800-25754200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
32	chr18:25753800-25754200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr18:25753800-25754400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
34	chr18:25753800-25754400	Enhancers	HSMM	muscle
35	chr18:25753800-25754600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr18:25753800-25758800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr18:25754000-25754200	Enhancers	Brain Anterior Caudate	brain
38	chr18:25754000-25754200	Enhancers	Dnd41	blood
39	chr18:25754000-25754600	Flanking Active TSS	HepG2	liver
40	chr18:25754000-25754800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
41	chr18:25754000-25755000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
42	chr18:25754000-25758800	Active TSS	Fetal Kidney	kidney
43	chr18:25754000-25759200	Active TSS	ES-WA7 Cell Line	embryonic stem cell

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