Variant report

Variant	rs7229523
Chromosome Location	chr18:25726104-25726105
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:25725957..25728565-chr18:25735891..25737665,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11564286	1.00[MEX][hapmap]
rs11564320	1.00[MEX][hapmap]
rs1373137	1.00[MEX][hapmap]
rs17536786	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1944289	1.00[AMR][1000 genomes]
rs7229198	0.90[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7233193	0.87[LWK][hapmap];0.89[MKK][hapmap];0.93[AFR][1000 genomes]
rs7238715	1.00[MEX][hapmap]
rs7240139	0.87[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.93[AFR][1000 genomes]
rs8092645	1.00[MEX][hapmap]
rs8095946	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25696200-25727800	Weak transcription	HSMMtube	muscle
2	chr18:25703800-25727600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr18:25703800-25730000	Weak transcription	Aorta	Aorta
4	chr18:25705000-25727800	Weak transcription	Ovary	ovary
5	chr18:25705200-25727400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr18:25709400-25727600	Weak transcription	A549	lung
7	chr18:25710200-25727600	Weak transcription	HepG2	liver
8	chr18:25710400-25726400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr18:25710400-25726400	Weak transcription	Fetal Brain Female	brain
10	chr18:25710400-25727600	Weak transcription	Brain Anterior Caudate	brain
11	chr18:25710400-25727600	Weak transcription	Brain Substantia Nigra	brain
12	chr18:25710600-25727400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr18:25710600-25731000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr18:25712600-25728400	Weak transcription	Right Ventricle	heart
15	chr18:25712600-25730000	Weak transcription	Left Ventricle	heart
16	chr18:25712800-25728400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr18:25713000-25727400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr18:25714800-25727600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr18:25716400-25727400	Weak transcription	HUVEC	blood vessel
20	chr18:25716800-25730400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr18:25717600-25727600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr18:25717600-25753400	Weak transcription	Dnd41	blood
23	chr18:25720800-25730000	Weak transcription	Fetal Kidney	kidney
24	chr18:25721400-25730000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr18:25722000-25726600	Weak transcription	Brain Angular Gyrus	brain
26	chr18:25722200-25727600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr18:25722600-25727000	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr18:25723800-25726400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr18:25724000-25727200	Enhancers	Brain Germinal Matrix	brain
30	chr18:25724000-25732400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr18:25724000-25732800	Weak transcription	Gastric	stomach
32	chr18:25724200-25727800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr18:25725000-25729800	Enhancers	Fetal Heart	heart
34	chr18:25725000-25731600	Enhancers	Liver	Liver
35	chr18:25725200-25726600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr18:25725400-25726400	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr18:25725400-25727400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr18:25725400-25727400	Weak transcription	Brain Cingulate Gyrus	brain
39	chr18:25725600-25726400	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr18:25725600-25727200	Weak transcription	Osteobl	bone
41	chr18:25725600-25727600	Weak transcription	NH-A	brain
42	chr18:25725600-25731000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr18:25725800-25726200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr18:25726000-25739200	Weak transcription	HSMM	muscle
45	chr18:25726000-25745400	Enhancers	Cortex derived primary cultured neurospheres	brain

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