Variant report

Variant	rs7238715
Chromosome Location	chr18:25666630-25666631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11564286	1.00[MEX][hapmap]
rs11564303	0.80[LWK][hapmap];0.86[MKK][hapmap]
rs11564317	0.80[LWK][hapmap];0.86[MKK][hapmap]
rs11564320	1.00[MEX][hapmap]
rs11564395	0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11564407	0.86[LWK][hapmap]
rs1373137	1.00[ASW][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.88[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17494290	0.83[AMR][1000 genomes]
rs6508524	0.89[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7229523	1.00[MEX][hapmap]
rs7240139	1.00[MEX][hapmap]
rs8087643	0.85[AFR][1000 genomes]
rs8092645	1.00[ASW][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8095946	0.97[LWK][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25650600-25666800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr18:25655800-25690800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr18:25657200-25666800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr18:25658600-25666800	Weak transcription	Fetal Kidney	kidney
5	chr18:25660200-25666800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr18:25660200-25666800	Weak transcription	Fetal Brain Male	brain
7	chr18:25661200-25666800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr18:25662000-25667000	Weak transcription	NHLF	lung
9	chr18:25662600-25667000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr18:25662800-25667400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr18:25662800-25668000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr18:25662800-25670000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr18:25663000-25667000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr18:25663600-25667000	Enhancers	Brain Germinal Matrix	brain
15	chr18:25663800-25667000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr18:25664000-25667000	Enhancers	Fetal Heart	heart
17	chr18:25664200-25667000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr18:25664600-25667000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr18:25665200-25666800	Enhancers	NH-A	brain
20	chr18:25665200-25667000	Enhancers	Liver	Liver
21	chr18:25665600-25666800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr18:25665600-25667000	Weak transcription	Right Atrium	heart
23	chr18:25665600-25667600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr18:25665600-25669800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr18:25665600-25671800	Weak transcription	Left Ventricle	heart
26	chr18:25666000-25666800	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr18:25666000-25666800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr18:25666000-25668000	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr18:25666200-25667000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr18:25666200-25667000	Active TSS	Brain Cingulate Gyrus	brain
31	chr18:25666200-25667000	Enhancers	Osteobl	bone
32	chr18:25666200-25667400	Enhancers	Right Ventricle	heart
33	chr18:25666400-25666800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
34	chr18:25666400-25666800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr18:25666400-25666800	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr18:25666400-25667200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
37	chr18:25666400-25667200	Enhancers	Fetal Brain Female	brain
38	chr18:25666400-25668000	Enhancers	HUVEC	blood vessel
39	chr18:25666400-25668800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr18:25666400-25671000	Enhancers	HepG2	liver
41	chr18:25666600-25666800	Enhancers	HSMMtube	muscle
42	chr18:25666600-25667000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr18:25666600-25667000	Active TSS	Brain Angular Gyrus	brain
44	chr18:25666600-25667000	Active TSS	Brain Anterior Caudate	brain
45	chr18:25666600-25667000	Active TSS	Brain Hippocampus Middle	brain
46	chr18:25666600-25667000	Active TSS	Brain Substantia Nigra	brain
47	chr18:25666600-25667000	Enhancers	A549	lung
48	chr18:25666600-25667200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
49	chr18:25666600-25667400	Active TSS	Brain Inferior Temporal Lobe	brain
50	chr18:25666600-25667400	Enhancers	Gastric	stomach

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