Variant report

Variant	rs1373137
Chromosome Location	chr18:25669757-25669758
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11564286	1.00[MEX][hapmap]
rs11564320	1.00[MEX][hapmap]
rs11564395	0.81[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11564407	0.82[MKK][hapmap]
rs17494290	0.83[AMR][1000 genomes]
rs6508524	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7229523	1.00[MEX][hapmap]
rs7238715	1.00[ASW][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.88[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7240139	1.00[MEX][hapmap]
rs8087643	0.91[AFR][1000 genomes]
rs8092645	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8095946	0.87[LWK][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25655800-25690800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr18:25662800-25670000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr18:25665600-25669800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr18:25665600-25671800	Weak transcription	Left Ventricle	heart
5	chr18:25666400-25671000	Enhancers	HepG2	liver
6	chr18:25667400-25670400	Weak transcription	Gastric	stomach
7	chr18:25667400-25671200	Enhancers	Liver	Liver
8	chr18:25667400-25672400	Enhancers	Fetal Heart	heart
9	chr18:25667600-25669800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr18:25667600-25669800	Weak transcription	Fetal Intestine Small	intestine
11	chr18:25667600-25670200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr18:25667600-25670400	Enhancers	Brain Germinal Matrix	brain
13	chr18:25667600-25670400	Weak transcription	Right Atrium	heart
14	chr18:25667600-25672200	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr18:25668000-25671400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr18:25668000-25680200	Weak transcription	HSMM	muscle
17	chr18:25668200-25669800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr18:25668200-25669800	Enhancers	Fetal Brain Female	brain
19	chr18:25668200-25670600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr18:25668200-25688000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr18:25668400-25670800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr18:25668600-25669800	Weak transcription	A549	lung
23	chr18:25668800-25670800	Weak transcription	Brain Angular Gyrus	brain
24	chr18:25668800-25671200	Weak transcription	Osteobl	bone
25	chr18:25668800-25671800	Weak transcription	Brain Substantia Nigra	brain
26	chr18:25668800-25671800	Weak transcription	Right Ventricle	heart
27	chr18:25668800-25672000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr18:25669000-25670200	Weak transcription	Pancreas	Pancrea
29	chr18:25669000-25674800	Weak transcription	NH-A	brain
30	chr18:25669400-25670000	Enhancers	Fetal Brain Male	brain
31	chr18:25669600-25670400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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