Variant report

Variant	rs11564407
Chromosome Location	chr18:25652827-25652828
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11564302	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11564303	1.00[ASW][hapmap];0.94[LWK][hapmap];0.92[MKK][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes]
rs11564317	1.00[ASW][hapmap];0.94[LWK][hapmap];0.92[MKK][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11564402	0.90[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1373137	0.82[MKK][hapmap]
rs17493199	1.00[AMR][1000 genomes]
rs17494220	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17522375	1.00[AMR][1000 genomes]
rs17522534	1.00[AMR][1000 genomes]
rs17535524	0.84[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7238715	0.86[LWK][hapmap]
rs7244253	0.83[ASW][hapmap];1.00[AMR][1000 genomes]
rs8084090	0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8092981	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8095946	0.92[ASW][hapmap];0.89[LWK][hapmap];0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25643000-25655200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr18:25643800-25653400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr18:25644000-25655200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr18:25645000-25658200	Weak transcription	Fetal Brain Female	brain
5	chr18:25646200-25666400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr18:25646800-25653600	Weak transcription	HSMM	muscle
7	chr18:25646800-25654000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr18:25647000-25655200	Weak transcription	NH-A	brain
9	chr18:25647600-25655000	Weak transcription	Osteobl	bone
10	chr18:25648800-25653400	Weak transcription	HepG2	liver
11	chr18:25649000-25653800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr18:25649600-25661400	Enhancers	Fetal Heart	heart
13	chr18:25650400-25654200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr18:25650600-25666800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr18:25651200-25654200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr18:25651200-25661800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr18:25651400-25655200	Weak transcription	Brain Angular Gyrus	brain
18	chr18:25651400-25655200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr18:25651400-25655400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr18:25651600-25653400	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr18:25651600-25655200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr18:25651600-25665200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr18:25651800-25655800	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr18:25652000-25653600	Weak transcription	A549	lung
25	chr18:25652200-25653600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr18:25652200-25655000	Weak transcription	Brain Anterior Caudate	brain
27	chr18:25652200-25655200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr18:25652400-25654000	Weak transcription	Spleen	Spleen
29	chr18:25652400-25655000	Weak transcription	Brain Hippocampus Middle	brain
30	chr18:25652400-25655200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr18:25652400-25655200	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr18:25652400-25655400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr18:25652400-25657000	Weak transcription	HUVEC	blood vessel
34	chr18:25652400-25659600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr18:25652400-25659600	Weak transcription	Right Atrium	heart
36	chr18:25652600-25653000	Weak transcription	Liver	Liver
37	chr18:25652600-25653600	Weak transcription	Brain Germinal Matrix	brain
38	chr18:25652600-25653600	Weak transcription	Left Ventricle	heart
39	chr18:25652600-25653800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr18:25652600-25653800	Weak transcription	Brain Substantia Nigra	brain
41	chr18:25652600-25659600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr18:25652600-25661800	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr18:25652600-25663800	Weak transcription	Right Ventricle	heart
44	chr18:25652800-25653200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr18:25652800-25653200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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