Variant report

Variant	rs17535524
Chromosome Location	chr18:25620979-25620980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11564302	0.86[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11564303	0.89[YRI][hapmap];0.93[AFR][1000 genomes]
rs11564317	0.89[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11564402	1.00[AMR][1000 genomes]
rs11564407	0.84[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17493199	1.00[AMR][1000 genomes]
rs17494220	0.86[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17522375	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs17522534	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs7244253	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs8084090	0.91[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8092981	0.86[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833605	chr18:25467096-25643447	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25583800-25621400	Weak transcription	Right Ventricle	heart
2	chr18:25609800-25621600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr18:25615200-25624600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr18:25616800-25625000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr18:25617000-25625000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr18:25617000-25628800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr18:25617200-25621200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr18:25617400-25625000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr18:25617400-25625200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr18:25617800-25621400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr18:25618000-25624200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr18:25618000-25624200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr18:25618400-25631600	Weak transcription	Fetal Brain Male	brain
14	chr18:25618800-25622000	Enhancers	Fetal Heart	heart
15	chr18:25619000-25621200	Enhancers	A549	lung
16	chr18:25619000-25621600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr18:25619000-25621800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr18:25619000-25621800	Enhancers	Muscle Satellite Cultured Cells	--
19	chr18:25619000-25621800	Enhancers	Brain Germinal Matrix	brain
20	chr18:25619000-25622400	Enhancers	NH-A	brain
21	chr18:25619200-25621200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr18:25619200-25621800	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr18:25619400-25623800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr18:25619400-25625000	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr18:25619400-25625400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr18:25619600-25622400	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr18:25619600-25623200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr18:25619600-25625200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr18:25619800-25625000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr18:25620000-25621600	Enhancers	Fetal Brain Female	brain
31	chr18:25620000-25622000	Enhancers	HSMM	muscle
32	chr18:25620200-25622800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr18:25620200-25625400	Weak transcription	Right Atrium	heart
34	chr18:25620400-25622400	Enhancers	Osteobl	bone
35	chr18:25620400-25624200	Weak transcription	Liver	Liver
36	chr18:25620400-25625000	Weak transcription	Brain Hippocampus Middle	brain
37	chr18:25620400-25625000	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr18:25620400-25625200	Weak transcription	Brain Cingulate Gyrus	brain
39	chr18:25620400-25625400	Weak transcription	Brain Substantia Nigra	brain
40	chr18:25620400-25627400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr18:25620400-25627600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr18:25620400-25629200	Weak transcription	Left Ventricle	heart
43	chr18:25620600-25624200	Weak transcription	Brain Anterior Caudate	brain
44	chr18:25620600-25625200	Weak transcription	Brain Angular Gyrus	brain
45	chr18:25620600-25625400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr18:25620600-25625400	Weak transcription	HUVEC	blood vessel
47	chr18:25620800-25621200	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links