Variant report

Variant	rs17522534
Chromosome Location	chr18:25589898-25589899
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11564302	1.00[AMR][1000 genomes]
rs11564317	1.00[AMR][1000 genomes]
rs11564402	1.00[AMR][1000 genomes]
rs11564407	1.00[AMR][1000 genomes]
rs17493199	1.00[AMR][1000 genomes]
rs17494220	1.00[AMR][1000 genomes]
rs17522375	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17535524	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs7244253	0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8084090	1.00[AMR][1000 genomes]
rs8092981	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1066192	chr18:25454413-25606736	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv543669	chr18:25454413-25606736	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv833605	chr18:25467096-25643447	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25531200-25593600	Weak transcription	Fetal Kidney	kidney
2	chr18:25553000-25593600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr18:25556200-25592800	Weak transcription	Aorta	Aorta
4	chr18:25556200-25595800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr18:25564800-25591400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr18:25565000-25592800	Weak transcription	A549	lung
7	chr18:25565200-25591800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr18:25573000-25590000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr18:25573600-25591200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr18:25573600-25593400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr18:25575600-25591400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr18:25577000-25591000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr18:25578200-25591400	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr18:25579200-25591400	Weak transcription	HepG2	liver
15	chr18:25580600-25593400	Weak transcription	Ovary	ovary
16	chr18:25580600-25595800	Weak transcription	Left Ventricle	heart
17	chr18:25582400-25593200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr18:25582600-25594000	Weak transcription	Dnd41	blood
19	chr18:25583600-25599000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr18:25583800-25593600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr18:25583800-25621400	Weak transcription	Right Ventricle	heart
22	chr18:25584200-25592400	Weak transcription	Brain Angular Gyrus	brain
23	chr18:25584400-25594200	Weak transcription	Brain Anterior Caudate	brain
24	chr18:25584400-25595000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr18:25585200-25592800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr18:25585400-25593400	Weak transcription	Fetal Brain Male	brain
27	chr18:25585600-25591400	Weak transcription	Fetal Lung	lung
28	chr18:25585600-25592400	Weak transcription	Brain Hippocampus Middle	brain
29	chr18:25585600-25593400	Weak transcription	HSMMtube	muscle
30	chr18:25585800-25591200	Weak transcription	HSMM	muscle
31	chr18:25585800-25594000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr18:25586200-25591400	Weak transcription	Brain Germinal Matrix	brain
33	chr18:25587600-25592400	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr18:25588000-25590600	Strong transcription	Liver	Liver
35	chr18:25588000-25592600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr18:25588000-25593600	Strong transcription	NH-A	brain
37	chr18:25588200-25591200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr18:25588200-25593400	Weak transcription	HUVEC	blood vessel
39	chr18:25588400-25590000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr18:25588800-25591200	Strong transcription	Muscle Satellite Cultured Cells	--
41	chr18:25589200-25591800	Strong transcription	Osteobl	bone
42	chr18:25589400-25591400	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr18:25589600-25590000	Strong transcription	Fetal Brain Female	brain
44	chr18:25589600-25590400	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr18:25589800-25590000	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr18:25589800-25590000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr18:25589800-25593800	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr18:25589800-25611000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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