Variant report

Variant	rs17494220
Chromosome Location	chr18:25643555-25643556
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11564302	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11564303	0.95[YRI][hapmap];0.88[AFR][1000 genomes]
rs11564317	0.95[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11564402	0.87[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11564407	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17493199	1.00[AMR][1000 genomes]
rs17494290	0.80[YRI][hapmap]
rs17522375	1.00[AMR][1000 genomes]
rs17522534	1.00[AMR][1000 genomes]
rs17535524	0.86[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7244253	1.00[AMR][1000 genomes]
rs8084090	0.95[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8092981	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8095946	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25625800-25650400	Weak transcription	Right Atrium	heart
2	chr18:25627600-25645600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr18:25638400-25643600	Weak transcription	Right Ventricle	heart
4	chr18:25641200-25645000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr18:25641400-25645000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr18:25641600-25644200	Weak transcription	Left Ventricle	heart
7	chr18:25642200-25643800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr18:25642400-25643600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr18:25642400-25646800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr18:25642400-25646800	Enhancers	HSMM	muscle
11	chr18:25642600-25643600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr18:25642600-25643600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr18:25642600-25643800	Enhancers	H1 Cell Line	embryonic stem cell
14	chr18:25642600-25643800	Enhancers	Brain Anterior Caudate	brain
15	chr18:25642600-25644000	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr18:25642600-25644000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr18:25642600-25644000	Enhancers	Brain Substantia Nigra	brain
18	chr18:25642600-25644200	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr18:25642600-25645000	Enhancers	Ovary	ovary
20	chr18:25642600-25645000	Enhancers	Osteobl	bone
21	chr18:25642600-25646200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr18:25642600-25646800	Enhancers	Fetal Heart	heart
23	chr18:25642800-25643800	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr18:25642800-25643800	Enhancers	Brain Angular Gyrus	brain
25	chr18:25642800-25644000	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr18:25642800-25644000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr18:25642800-25644000	Enhancers	NHLF	lung
28	chr18:25642800-25644800	Enhancers	HSMMtube	muscle
29	chr18:25642800-25646200	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr18:25642800-25647400	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr18:25643000-25643800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr18:25643000-25645000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr18:25643000-25655200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr18:25643200-25643600	Flanking Active TSS	NH-A	brain
35	chr18:25643200-25643800	Enhancers	H9 Cell Line	embryonic stem cell
36	chr18:25643200-25643800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr18:25643200-25643800	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr18:25643200-25643800	Enhancers	Brain Cingulate Gyrus	brain
39	chr18:25643200-25643800	Enhancers	Brain Germinal Matrix	brain
40	chr18:25643200-25643800	Enhancers	Placenta Amnion	Placenta Amnion
41	chr18:25643200-25644000	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr18:25643200-25644000	Enhancers	Fetal Kidney	kidney
43	chr18:25643200-25644200	Enhancers	HUVEC	blood vessel
44	chr18:25643200-25644800	Enhancers	A549	lung
45	chr18:25643200-25645800	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr18:25643200-25646000	Enhancers	Brain Hippocampus Middle	brain
47	chr18:25643200-25646600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr18:25643200-25646800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr18:25643200-25647400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr18:25643400-25643600	Enhancers	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links