Variant report

Variant	rs11564402
Chromosome Location	chr18:25666346-25666347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11564302	0.87[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11564303	0.85[YRI][hapmap];0.86[AFR][1000 genomes]
rs11564317	0.85[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11564407	0.90[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17493199	1.00[AMR][1000 genomes]
rs17494220	0.87[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17522375	1.00[AMR][1000 genomes]
rs17522534	1.00[AMR][1000 genomes]
rs17535524	1.00[AMR][1000 genomes]
rs7244253	1.00[AMR][1000 genomes]
rs8084090	0.83[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8092981	0.87[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25646200-25666400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr18:25650600-25666800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr18:25655800-25690800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr18:25657200-25666800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr18:25658600-25666800	Weak transcription	Fetal Kidney	kidney
6	chr18:25658800-25666600	Weak transcription	HSMMtube	muscle
7	chr18:25660200-25666600	Weak transcription	HSMM	muscle
8	chr18:25660200-25666800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr18:25660200-25666800	Weak transcription	Fetal Brain Male	brain
10	chr18:25661200-25666800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr18:25661400-25666400	Weak transcription	HepG2	liver
12	chr18:25662000-25667000	Weak transcription	NHLF	lung
13	chr18:25662600-25667000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr18:25662800-25666400	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr18:25662800-25666600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr18:25662800-25667400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr18:25662800-25668000	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr18:25662800-25670000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr18:25663000-25666400	Enhancers	Brain Angular Gyrus	brain
20	chr18:25663000-25667000	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr18:25663600-25666400	Enhancers	Brain Anterior Caudate	brain
22	chr18:25663600-25667000	Enhancers	Brain Germinal Matrix	brain
23	chr18:25663800-25666400	Enhancers	Brain Hippocampus Middle	brain
24	chr18:25663800-25667000	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr18:25664000-25667000	Enhancers	Fetal Heart	heart
26	chr18:25664200-25667000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr18:25664400-25666600	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr18:25664600-25667000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr18:25665200-25666800	Enhancers	NH-A	brain
30	chr18:25665200-25667000	Enhancers	Liver	Liver
31	chr18:25665400-25666400	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr18:25665400-25666400	Enhancers	Brain Substantia Nigra	brain
33	chr18:25665600-25666400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr18:25665600-25666600	Weak transcription	A549	lung
35	chr18:25665600-25666800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr18:25665600-25667000	Weak transcription	Right Atrium	heart
37	chr18:25665600-25667600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr18:25665600-25669800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr18:25665600-25671800	Weak transcription	Left Ventricle	heart
40	chr18:25666000-25666400	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr18:25666000-25666800	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr18:25666000-25666800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr18:25666000-25668000	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr18:25666200-25666400	Enhancers	Placenta Amnion	Placenta Amnion
45	chr18:25666200-25666600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr18:25666200-25666600	Enhancers	Muscle Satellite Cultured Cells	--
47	chr18:25666200-25667000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr18:25666200-25667000	Active TSS	Brain Cingulate Gyrus	brain
49	chr18:25666200-25667000	Enhancers	Osteobl	bone
50	chr18:25666200-25667400	Enhancers	Right Ventricle	heart

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