Variant report

Variant	rs11564317
Chromosome Location	chr18:25628982-25628983
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11564302	0.95[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11564303	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11564402	0.85[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11564407	1.00[ASW][hapmap];0.94[LWK][hapmap];0.92[MKK][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17493199	1.00[AMR][1000 genomes]
rs17494220	0.95[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17522375	1.00[AMR][1000 genomes]
rs17522534	1.00[AMR][1000 genomes]
rs17535524	0.89[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7238715	0.80[LWK][hapmap];0.86[MKK][hapmap]
rs7244253	0.83[ASW][hapmap];1.00[AMR][1000 genomes]
rs8084090	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8092645	0.83[MKK][hapmap]
rs8092981	0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8095946	0.92[ASW][hapmap];0.83[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833605	chr18:25467096-25643447	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25618400-25631600	Weak transcription	Fetal Brain Male	brain
2	chr18:25620400-25629200	Weak transcription	Left Ventricle	heart
3	chr18:25625800-25630800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr18:25625800-25643400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr18:25625800-25650400	Weak transcription	Right Atrium	heart
6	chr18:25626000-25629800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr18:25626000-25643200	Weak transcription	HUVEC	blood vessel
8	chr18:25626200-25629200	Weak transcription	HSMM	muscle
9	chr18:25626200-25630800	Weak transcription	Osteobl	bone
10	chr18:25627400-25629800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr18:25627600-25629000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr18:25627600-25645600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr18:25627800-25629600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr18:25628200-25629000	Active TSS	Brain Hippocampus Middle	brain
15	chr18:25628200-25629200	Enhancers	Fetal Brain Female	brain
16	chr18:25628200-25630200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr18:25628400-25629000	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr18:25628400-25629000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr18:25628400-25629000	Active TSS	Aorta	Aorta
20	chr18:25628400-25629000	Flanking Active TSS	Brain Germinal Matrix	brain
21	chr18:25628400-25629200	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr18:25628400-25629200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr18:25628400-25629400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr18:25628400-25629400	Enhancers	NH-A	brain
25	chr18:25628400-25629800	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr18:25628400-25629800	Enhancers	Liver	Liver
27	chr18:25628400-25630000	Enhancers	H9 Cell Line	embryonic stem cell
28	chr18:25628400-25630000	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr18:25628400-25630000	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr18:25628400-25630000	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr18:25628600-25629000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr18:25628600-25629000	Enhancers	Fetal Kidney	kidney
33	chr18:25628800-25629000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr18:25628800-25629000	Enhancers	Muscle Satellite Cultured Cells	--
35	chr18:25628800-25629000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
36	chr18:25628800-25629000	Flanking Active TSS	Brain Cingulate Gyrus	brain
37	chr18:25628800-25629000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
38	chr18:25628800-25629200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
39	chr18:25628800-25629200	Flanking Active TSS	Brain Anterior Caudate	brain
40	chr18:25628800-25629200	Active TSS	Brain Substantia Nigra	brain
41	chr18:25628800-25629600	Active TSS	A549	lung
42	chr18:25628800-25629800	Enhancers	Fetal Heart	heart
43	chr18:25628800-25630000	Enhancers	Brain Angular Gyrus	brain
44	chr18:25628800-25630400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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