Variant report

Variant	rs8092645
Chromosome Location	chr18:25665674-25665675
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11564286	1.00[MEX][hapmap]
rs11564303	0.83[MKK][hapmap]
rs11564317	0.83[MKK][hapmap]
rs11564320	1.00[MEX][hapmap]
rs11564395	0.81[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1373137	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17494290	0.83[AMR][1000 genomes]
rs6508524	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7229523	1.00[MEX][hapmap]
rs7238715	1.00[ASW][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7240139	1.00[MEX][hapmap]
rs8087643	0.91[AFR][1000 genomes]
rs8095946	0.87[LWK][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25646200-25666400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr18:25650600-25666800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr18:25654000-25666000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr18:25655800-25690800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr18:25657200-25666800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr18:25657800-25666000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr18:25658600-25666800	Weak transcription	Fetal Kidney	kidney
8	chr18:25658800-25666600	Weak transcription	HSMMtube	muscle
9	chr18:25660200-25666200	Weak transcription	Osteobl	bone
10	chr18:25660200-25666600	Weak transcription	HSMM	muscle
11	chr18:25660200-25666800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr18:25660200-25666800	Weak transcription	Fetal Brain Male	brain
13	chr18:25661000-25666200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr18:25661200-25666800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr18:25661400-25666400	Weak transcription	HepG2	liver
16	chr18:25662000-25667000	Weak transcription	NHLF	lung
17	chr18:25662600-25667000	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr18:25662800-25666400	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr18:25662800-25666600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr18:25662800-25667400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr18:25662800-25668000	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr18:25662800-25670000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr18:25663000-25666200	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr18:25663000-25666400	Enhancers	Brain Angular Gyrus	brain
25	chr18:25663000-25667000	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr18:25663200-25666200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr18:25663600-25666400	Enhancers	Brain Anterior Caudate	brain
28	chr18:25663600-25667000	Enhancers	Brain Germinal Matrix	brain
29	chr18:25663800-25666400	Enhancers	Brain Hippocampus Middle	brain
30	chr18:25663800-25667000	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr18:25664000-25667000	Enhancers	Fetal Heart	heart
32	chr18:25664200-25666200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
33	chr18:25664200-25667000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr18:25664400-25665800	Enhancers	Right Ventricle	heart
35	chr18:25664400-25666600	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr18:25664600-25667000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr18:25665200-25666200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr18:25665200-25666800	Enhancers	NH-A	brain
39	chr18:25665200-25667000	Enhancers	Liver	Liver
40	chr18:25665400-25666000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
41	chr18:25665400-25666400	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr18:25665400-25666400	Enhancers	Brain Substantia Nigra	brain
43	chr18:25665600-25666400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr18:25665600-25666600	Weak transcription	A549	lung
45	chr18:25665600-25666800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr18:25665600-25667000	Weak transcription	Right Atrium	heart
47	chr18:25665600-25667600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr18:25665600-25669800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr18:25665600-25671800	Weak transcription	Left Ventricle	heart

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