Variant report

Variant	rs17494290
Chromosome Location	chr18:25649924-25649925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11564302	0.80[YRI][hapmap]
rs11564395	0.83[AMR][1000 genomes]
rs1373137	0.83[AMR][1000 genomes]
rs17494220	0.80[YRI][hapmap]
rs6508524	0.83[AMR][1000 genomes]
rs7238715	0.83[AMR][1000 genomes]
rs8092645	0.83[AMR][1000 genomes]
rs8092981	0.80[YRI][hapmap]
rs8095946	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25625800-25650400	Weak transcription	Right Atrium	heart
2	chr18:25643000-25655200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr18:25643800-25651200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr18:25643800-25653400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr18:25644000-25655200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr18:25645000-25651200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr18:25645000-25658200	Weak transcription	Fetal Brain Female	brain
8	chr18:25645800-25650400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr18:25646000-25650400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr18:25646000-25651000	Weak transcription	Brain Hippocampus Middle	brain
11	chr18:25646000-25651200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr18:25646000-25651200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr18:25646200-25650000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr18:25646200-25650200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr18:25646200-25666400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr18:25646600-25650400	Weak transcription	Brain Germinal Matrix	brain
17	chr18:25646800-25650400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr18:25646800-25650800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr18:25646800-25651200	Weak transcription	HUVEC	blood vessel
20	chr18:25646800-25653600	Weak transcription	HSMM	muscle
21	chr18:25646800-25654000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr18:25647000-25650400	Weak transcription	A549	lung
23	chr18:25647000-25655200	Weak transcription	NH-A	brain
24	chr18:25647400-25650400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr18:25647600-25655000	Weak transcription	Osteobl	bone
26	chr18:25647800-25651400	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr18:25648800-25651200	Weak transcription	Fetal Lung	lung
28	chr18:25648800-25651400	Weak transcription	Liver	Liver
29	chr18:25648800-25653400	Weak transcription	HepG2	liver
30	chr18:25649000-25653800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr18:25649200-25652200	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr18:25649600-25650400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr18:25649600-25650800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr18:25649600-25651400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr18:25649600-25661400	Enhancers	Fetal Heart	heart
36	chr18:25649800-25650200	Weak transcription	Left Ventricle	heart
37	chr18:25649800-25650200	Weak transcription	Right Ventricle	heart

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