Variant report

Variant	rs17581787
Chromosome Location	chr4:149269585-149269586
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10001430	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10034882	0.91[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10519958	0.91[CEU][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1512329	0.91[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17484678	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17484811	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17581884	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17581905	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17581947	0.91[CEU][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17581996	0.91[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28588362	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28621626	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28639664	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28648617	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28698626	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4835516	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56387992	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57419274	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62333612	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62333616	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62333649	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6831034	0.84[CEU][hapmap]
rs6831376	0.91[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72729968	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9631755	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9631756	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9991002	0.91[CEU][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9993239	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9999121	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1028105	chr4:149199913-149284620	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537297	chr4:149199913-149284620	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1019350	chr4:149232430-149282117	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3584816	chr4:149254670-149293317	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149249400-149271200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr4:149266000-149276400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr4:149267000-149280600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr4:149267200-149276800	Weak transcription	Colonic Mucosa	Colon
5	chr4:149267400-149276800	Weak transcription	Liver	Liver
6	chr4:149267600-149269800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr4:149267600-149272800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr4:149267600-149276600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr4:149267600-149276600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr4:149267800-149271400	Weak transcription	Psoas Muscle	Psoas
11	chr4:149267800-149282000	Weak transcription	Right Ventricle	heart
12	chr4:149268200-149276200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr4:149268200-149276600	Weak transcription	Left Ventricle	heart
14	chr4:149268200-149276600	Weak transcription	Ovary	ovary
15	chr4:149268200-149276600	Weak transcription	Right Atrium	heart
16	chr4:149268200-149288000	Weak transcription	Small Intestine	intestine
17	chr4:149268400-149270400	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr4:149269400-149269600	Enhancers	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links