Variant report

Variant	rs6831376
Chromosome Location	chr4:149323163-149323164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10001430	0.93[CEU][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10034882	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10519958	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1512329	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17484678	0.93[CEU][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17484811	0.93[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17581787	0.91[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17581884	0.93[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17581905	0.93[CEU][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17581947	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17581996	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28588362	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28621626	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28639664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28648617	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28698626	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4835516	1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56387992	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57419274	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62333612	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62333616	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62333649	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72729968	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9631755	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9631756	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9991002	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9993239	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9999121	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv530433	chr4:149277637-149669181	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149297800-149350000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:149299000-149329000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr4:149307600-149336600	Weak transcription	Aorta	Aorta
4	chr4:149312800-149338800	Weak transcription	Brain Hippocampus Middle	brain
5	chr4:149313200-149326400	Weak transcription	Fetal Intestine Small	intestine
6	chr4:149315800-149326400	Weak transcription	Right Ventricle	heart
7	chr4:149318600-149326400	Weak transcription	Right Atrium	heart
8	chr4:149318600-149327400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr4:149318800-149346600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr4:149319000-149339000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr4:149319200-149326400	Weak transcription	Left Ventricle	heart
12	chr4:149319200-149326400	Weak transcription	Psoas Muscle	Psoas
13	chr4:149319200-149327200	Weak transcription	Fetal Stomach	stomach
14	chr4:149319200-149335000	Weak transcription	Esophagus	oesophagus
15	chr4:149319200-149339200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr4:149319400-149326400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr4:149319400-149334600	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr4:149320400-149326200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr4:149320400-149351800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr4:149321000-149326200	Weak transcription	Stomach Mucosa	stomach
21	chr4:149321200-149326400	Weak transcription	Fetal Heart	heart
22	chr4:149321400-149328000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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