Variant report

Variant	rs9631755
Chromosome Location	chr4:149276414-149276415
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10001430	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10034882	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10519958	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1512329	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17484678	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17484811	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17581787	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17581884	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17581905	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17581947	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17581996	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28588362	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28621626	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28639664	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28648617	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28698626	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4835516	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56387992	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57419274	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62333612	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62333616	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62333649	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6831376	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72729968	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9631756	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9991002	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9993239	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9999121	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1028105	chr4:149199913-149284620	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537297	chr4:149199913-149284620	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1019350	chr4:149232430-149282117	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3584816	chr4:149254670-149293317	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149267000-149280600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:149267200-149276800	Weak transcription	Colonic Mucosa	Colon
3	chr4:149267400-149276800	Weak transcription	Liver	Liver
4	chr4:149267600-149276600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr4:149267600-149276600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr4:149267800-149282000	Weak transcription	Right Ventricle	heart
7	chr4:149268200-149276600	Weak transcription	Left Ventricle	heart
8	chr4:149268200-149276600	Weak transcription	Ovary	ovary
9	chr4:149268200-149276600	Weak transcription	Right Atrium	heart
10	chr4:149268200-149288000	Weak transcription	Small Intestine	intestine
11	chr4:149271000-149276600	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr4:149271400-149276600	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr4:149272000-149280400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr4:149272000-149282000	Weak transcription	Psoas Muscle	Psoas
15	chr4:149273200-149276600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr4:149276200-149277000	Flanking Active TSS	HUVEC	blood vessel
17	chr4:149276200-149277200	Enhancers	Brain Hippocampus Middle	brain
18	chr4:149276200-149277400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr4:149276200-149278200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr4:149276200-149278200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr4:149276200-149278400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr4:149276400-149276600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr4:149276400-149276800	Enhancers	Fetal Heart	heart
24	chr4:149276400-149276800	Enhancers	Rectal Smooth Muscle	rectum
25	chr4:149276400-149276800	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr4:149276400-149277200	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr4:149276400-149277200	Enhancers	Primary T killer memory cells from peripheral blood	blood
28	chr4:149276400-149277200	Enhancers	Colon Smooth Muscle	Colon
29	chr4:149276400-149278200	Enhancers	Primary T helper naive cells from peripheral blood	blood

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