Variant report

Variant	rs17581884
Chromosome Location	chr4:149299071-149299072
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10001430	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10034882	0.93[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10519958	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1512329	0.93[CEU][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17484678	1.00[CEU][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17484811	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17581787	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17581905	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17581947	0.93[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17581996	0.93[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28588362	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28621626	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28639664	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28648617	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28698626	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4835516	1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56387992	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57419274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62333612	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62333616	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62333649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6831034	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs6831376	0.93[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72729968	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9631755	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9631756	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9991002	0.93[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9993239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9999121	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv530433	chr4:149277637-149669181	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv880246	chr4:149287807-149311728	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149277000-149306800	Weak transcription	Pancreas	Pancrea
2	chr4:149281200-149300800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:149292200-149315000	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:149296800-149299600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr4:149297000-149299200	Enhancers	Fetal Heart	heart
6	chr4:149297600-149300600	Weak transcription	Brain Hippocampus Middle	brain
7	chr4:149297600-149304600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr4:149297800-149299200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr4:149297800-149299200	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr4:149297800-149301400	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr4:149297800-149306000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr4:149297800-149306000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr4:149297800-149306000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr4:149297800-149350000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr4:149298000-149301400	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr4:149298400-149311600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr4:149298600-149299200	ZNF genes & repeats	Ovary	ovary
18	chr4:149298600-149300600	Enhancers	Left Ventricle	heart
19	chr4:149298800-149299200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr4:149299000-149299200	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr4:149299000-149306000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr4:149299000-149306800	Weak transcription	Psoas Muscle	Psoas
23	chr4:149299000-149329000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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