Variant report

Variant	rs17599360
Chromosome Location	chr5:147357668-147357669
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10491340	0.95[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10515597	0.90[AMR][1000 genomes]
rs10515599	0.90[AMR][1000 genomes]
rs17599437	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17599451	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17774838	0.90[AMR][1000 genomes]
rs34578922	0.90[AMR][1000 genomes]
rs34733654	0.90[AMR][1000 genomes]
rs35020001	0.90[AMR][1000 genomes]
rs35474788	0.90[AMR][1000 genomes]
rs35783964	0.90[AMR][1000 genomes]
rs35861469	0.90[AMR][1000 genomes]
rs71580469	0.90[AMR][1000 genomes]
rs71580474	0.85[AMR][1000 genomes]
rs7724336	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028477	chr5:147255013-147416217	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147344400-147363000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:147346400-147360400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr5:147352200-147359200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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