Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:147374166..147375846-chr5:147383379..147385077,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10074782	1.00[CEU][hapmap]
rs10491340	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10515597	0.84[AMR][1000 genomes]
rs10515599	0.84[AMR][1000 genomes]
rs11957744	1.00[CEU][hapmap]
rs11960620	1.00[CEU][hapmap]
rs17107575	1.00[CEU][hapmap]
rs17599360	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17599451	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17641707	1.00[CEU][hapmap];0.80[AMR][1000 genomes]
rs17774838	0.84[AMR][1000 genomes]
rs2052530	0.80[AMR][1000 genomes]
rs34578922	0.84[AMR][1000 genomes]
rs34733654	0.84[AMR][1000 genomes]
rs35020001	0.84[AMR][1000 genomes]
rs35474788	0.84[AMR][1000 genomes]
rs35783964	0.84[AMR][1000 genomes]
rs35861469	0.84[AMR][1000 genomes]
rs71580469	0.84[AMR][1000 genomes]
rs71580474	0.80[AMR][1000 genomes]
rs7724336	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028477	chr5:147255013-147416217	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1033838	chr5:147360521-147484014	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147365400-147379400	Weak transcription	Esophagus	oesophagus
2	chr5:147371800-147378400	Weak transcription	H9 Cell Line	embryonic stem cell

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