Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:147377762..147382319-chr5:147386529..147391595,4	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10491340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10491341	1.00[AFR][1000 genomes]
rs10515597	0.84[AMR][1000 genomes]
rs10515599	0.84[AMR][1000 genomes]
rs1363719	1.00[AFR][1000 genomes]
rs1422985	1.00[AFR][1000 genomes]
rs17599360	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17599437	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17599528	1.00[AFR][1000 genomes]
rs17641707	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs17718420	1.00[AFR][1000 genomes]
rs17718511	1.00[AFR][1000 genomes]
rs17718535	1.00[AFR][1000 genomes]
rs17774838	0.84[AMR][1000 genomes]
rs17774892	1.00[AFR][1000 genomes]
rs17774947	1.00[AFR][1000 genomes]
rs17860502	1.00[AFR][1000 genomes]
rs2052530	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs2287774	1.00[AFR][1000 genomes]
rs2303069	1.00[AFR][1000 genomes]
rs34578922	0.84[AMR][1000 genomes]
rs34733654	0.84[AMR][1000 genomes]
rs35020001	0.84[AMR][1000 genomes]
rs35474788	0.84[AMR][1000 genomes]
rs35783964	0.84[AMR][1000 genomes]
rs35861469	0.84[AMR][1000 genomes]
rs56945766	1.00[AFR][1000 genomes]
rs58789871	1.00[AFR][1000 genomes]
rs59140447	1.00[AFR][1000 genomes]
rs60978485	1.00[AFR][1000 genomes]
rs61547850	1.00[AFR][1000 genomes]
rs71580469	0.84[AMR][1000 genomes]
rs71580474	0.80[AMR][1000 genomes]
rs7724336	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028477	chr5:147255013-147416217	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1033838	chr5:147360521-147484014	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147377200-147380200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:147377800-147379800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:147378600-147379800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:147379200-147382400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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