Variant report

Variant	rs35474788
Chromosome Location	chr5:147351262-147351263
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10491340	0.84[AMR][1000 genomes]
rs10515597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10515599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17599360	0.90[AMR][1000 genomes]
rs17599437	0.84[AMR][1000 genomes]
rs17599451	0.84[AMR][1000 genomes]
rs17774838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34578922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34733654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs35020001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35783964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35861469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71580469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs71580474	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7724336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028477	chr5:147255013-147416217	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147336400-147352800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:147336600-147352600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr5:147343800-147352800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:147344400-147351800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:147344400-147363000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:147345200-147352000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr5:147345400-147352800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr5:147345600-147353200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:147346400-147360400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr5:147350800-147351400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr5:147350800-147352200	Enhancers	HMEC	breast
12	chr5:147350800-147352400	Enhancers	NHEK	skin
13	chr5:147350800-147353000	Enhancers	Fetal Lung	lung
14	chr5:147351000-147352200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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