Variant report

Variant	rs17601584
Chromosome Location	chr17:59552682-59552683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr17:59551677-59553668	MCF10A-Er-Src	breast:	n/a	chr17:59551999-59552022
2	TEAD4	chr17:59552661-59553321	A549	lung:	n/a	n/a
3	FOS	chr17:59552622-59552886	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr17:59551598-59552717	MCF10A-Er-Src	breast:	n/a	chr17:59552169-59552179 chr17:59552169-59552179
5	FOXA2	chr17:59552516-59552784	HepG2	liver:	n/a	n/a
6	FOS	chr17:59551664-59552910	MCF10A-Er-Src	breast:	n/a	chr17:59552169-59552179 chr17:59552169-59552179
7	FOXA1	chr17:59552540-59552824	HepG2	liver:	n/a	n/a
8	HNF4A	chr17:59552523-59552714	HepG2	liver:	n/a	chr17:59552621-59552633 chr17:59552623-59552638 chr17:59552607-59552622
9	FOXA1	chr17:59552502-59552792	HepG2	liver:	n/a	n/a
10	PML	chr17:59549248-59559234	MCF-7	breast:	n/a	n/a
11	FOXA1	chr17:59552420-59552791	HepG2	liver:	n/a	n/a
12	STAT3	chr17:59551785-59552959	MCF10A-Er-Src	breast:	n/a	chr17:59551999-59552022
13	STAT3	chr17:59551721-59552960	MCF10A-Er-Src	breast:	n/a	chr17:59551999-59552022
14	POLR2A	chr17:59551716-59552867	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:149222378..149225503-chr17:59550904..59555232,4	MCF-7	breast:

Variant related genes	Relation type
TBX4	TF binding region
ENSG00000206737	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2270150	1.00[JPT][hapmap]
rs3744435	0.88[GIH][hapmap]
rs3744436	0.88[GIH][hapmap]
rs3785825	0.94[GIH][hapmap];1.00[JPT][hapmap]
rs7213643	0.94[GIH][hapmap];1.00[JPT][hapmap]
rs7214133	0.94[GIH][hapmap];1.00[JPT][hapmap]
rs8070051	1.00[JPT][hapmap]
rs8079367	0.90[ASW][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs8079753	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8080416	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833506	chr17:59362377-59562984	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	334 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59543200-59564800	Genic enhancers	NHLF	lung
2	chr17:59545600-59563000	Weak transcription	Lung	lung
3	chr17:59548200-59563400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr17:59548600-59554000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr17:59550600-59554800	Genic enhancers	Fetal Lung	lung
6	chr17:59550800-59552800	Genic enhancers	Fetal Muscle Leg	muscle
7	chr17:59550800-59553000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr17:59551000-59553600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr17:59551000-59554400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr17:59551200-59553400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr17:59551200-59553400	Enhancers	NHDF-Ad	bronchial
12	chr17:59551200-59554600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr17:59551800-59556800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr17:59552000-59552800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr17:59552000-59553600	Enhancers	HMEC	breast
16	chr17:59552000-59554400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr17:59552200-59553800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr17:59552400-59553400	Enhancers	HepG2	liver
19	chr17:59552600-59553000	Enhancers	Fetal Intestine Large	intestine
20	chr17:59552600-59553600	Enhancers	NHEK	skin
21	chr17:59552600-59554200	Weak transcription	Esophagus	oesophagus
22	chr17:59552600-59554400	Genic enhancers	Placenta	Placenta

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