Variant report

Variant	rs3785825
Chromosome Location	chr17:59556341-59556342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17601584	0.94[GIH][hapmap];1.00[JPT][hapmap]
rs2270150	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3744435	1.00[CEU][hapmap];0.94[GIH][hapmap];0.80[AMR][1000 genomes]
rs3744436	0.93[CEU][hapmap];0.94[GIH][hapmap];0.89[MEX][hapmap];0.84[AMR][1000 genomes]
rs3785822	0.95[ASN][1000 genomes]
rs3785823	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62071332	0.91[ASN][1000 genomes]
rs6504052	1.00[JPT][hapmap]
rs67763506	0.95[ASN][1000 genomes]
rs7213643	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7214133	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7217738	1.00[JPT][hapmap]
rs73334581	0.95[ASN][1000 genomes]
rs8069311	1.00[JPT][hapmap]
rs8070051	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs8079367	0.80[ASW][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833506	chr17:59362377-59562984	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	334 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3785825	GMPR	trans	lymphoblastoid	seeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59543200-59564800	Genic enhancers	NHLF	lung
2	chr17:59545600-59563000	Weak transcription	Lung	lung
3	chr17:59548200-59563400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr17:59551800-59556800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr17:59553000-59563800	Weak transcription	Fetal Intestine Large	intestine
6	chr17:59554400-59559600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr17:59554400-59564000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr17:59554800-59557600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr17:59554800-59560800	Weak transcription	Fetal Brain Male	brain
10	chr17:59555000-59556600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr17:59555000-59557600	Weak transcription	Placenta	Placenta
12	chr17:59555000-59563200	Strong transcription	Fetal Muscle Leg	muscle
13	chr17:59555800-59556400	Genic enhancers	Fetal Muscle Trunk	muscle
14	chr17:59555800-59563200	Genic enhancers	Fetal Lung	lung
15	chr17:59556200-59556400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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