Variant report

Variant	rs8070051
Chromosome Location	chr17:59566682-59566683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:59566455..59568113-chr20:45987435..45989771,2	MCF-7	breast:
2	chr17:59566204..59567959-chr17:73770155..73771758,2	MCF-7	breast:
3	chr17:57914384..57918845-chr17:59566122..59570008,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000062716	Chromatin interaction
ENSG00000199004	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1069	0.81[ASN][1000 genomes]
rs17601584	1.00[JPT][hapmap]
rs2270150	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3785822	0.95[ASN][1000 genomes]
rs3785823	0.95[ASN][1000 genomes]
rs3785825	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs58024435	0.81[ASN][1000 genomes]
rs62071332	0.91[ASN][1000 genomes]
rs67763506	0.95[ASN][1000 genomes]
rs7213643	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7214133	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs73334581	0.95[ASN][1000 genomes]
rs8079367	1.00[JPT][hapmap]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59563200-59566800	Weak transcription	Esophagus	oesophagus
2	chr17:59563200-59567200	Enhancers	Fetal Lung	lung
3	chr17:59564000-59567000	Weak transcription	Pancreas	Pancrea
4	chr17:59564200-59572600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr17:59564200-59572800	Weak transcription	Right Atrium	heart
6	chr17:59564800-59566800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr17:59564800-59566800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr17:59564800-59566800	Weak transcription	NHLF	lung
9	chr17:59564800-59570200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr17:59564800-59573800	Weak transcription	Spleen	Spleen
11	chr17:59564800-59576000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr17:59565000-59567400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr17:59565000-59568000	Weak transcription	Placenta	Placenta
14	chr17:59565400-59568600	Enhancers	Fetal Intestine Small	intestine
15	chr17:59565400-59574200	Enhancers	Fetal Intestine Large	intestine
16	chr17:59565800-59566800	Enhancers	A549	lung
17	chr17:59565800-59567600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr17:59565800-59568400	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr17:59566400-59567200	Flanking Active TSS	HepG2	liver
20	chr17:59566400-59567400	Enhancers	Liver	Liver
21	chr17:59566400-59567400	Enhancers	Duodenum Mucosa	Duodenum
22	chr17:59566400-59568200	Enhancers	Stomach Mucosa	stomach
23	chr17:59566400-59568400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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