Variant report

Variant	rs7213643
Chromosome Location	chr17:59559665-59559666
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17601584	0.94[GIH][hapmap];1.00[JPT][hapmap]
rs2270150	0.84[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3744435	0.94[GIH][hapmap]
rs3744436	0.94[GIH][hapmap]
rs3785822	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3785823	1.00[ASN][1000 genomes]
rs3785825	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62071332	0.95[ASN][1000 genomes]
rs67763506	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7214133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73334581	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8070051	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs8079367	0.84[GIH][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833506	chr17:59362377-59562984	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	334 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59543200-59564800	Genic enhancers	NHLF	lung
2	chr17:59545600-59563000	Weak transcription	Lung	lung
3	chr17:59548200-59563400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr17:59553000-59563800	Weak transcription	Fetal Intestine Large	intestine
5	chr17:59554400-59564000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr17:59554800-59560800	Weak transcription	Fetal Brain Male	brain
7	chr17:59555000-59563200	Strong transcription	Fetal Muscle Leg	muscle
8	chr17:59555800-59563200	Genic enhancers	Fetal Lung	lung
9	chr17:59556800-59560400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr17:59557800-59559800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr17:59557800-59562400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr17:59558200-59563400	Weak transcription	Fetal Intestine Small	intestine
13	chr17:59559000-59563400	Weak transcription	Placenta	Placenta
14	chr17:59559400-59560000	Strong transcription	Fetal Muscle Trunk	muscle
15	chr17:59559600-59560400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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