Variant report

Variant	rs17616237
Chromosome Location	chr4:95792040-95792041
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10516954	0.85[JPT][hapmap]
rs11723423	1.00[JPT][hapmap]
rs11943082	0.81[JPT][hapmap]
rs28713768	1.00[EUR][1000 genomes]
rs3775018	0.92[CHB][hapmap];0.92[JPT][hapmap]
rs4416484	1.00[CEU][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes]
rs58150305	0.83[EUR][1000 genomes]
rs58519858	0.83[EUR][1000 genomes]
rs6853333	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs72884135	1.00[EUR][1000 genomes]
rs72884143	1.00[EUR][1000 genomes]
rs72885830	1.00[EUR][1000 genomes]
rs72885860	1.00[EUR][1000 genomes]
rs72885868	1.00[EUR][1000 genomes]
rs72885877	0.83[EUR][1000 genomes]
rs73838368	1.00[EUR][1000 genomes]
rs7665643	1.00[EUR][1000 genomes]
rs7677261	0.81[JPT][hapmap]
rs9968534	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95781200-95810600	Weak transcription	Fetal Kidney	kidney
2	chr4:95790200-95793000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr4:95791000-95792200	Enhancers	Dnd41	blood
4	chr4:95791400-95792800	Enhancers	A549	lung
5	chr4:95791400-95794000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:95792000-95793000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:95792000-95793000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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