Variant report

Variant	rs6853333
Chromosome Location	chr4:95750415-95750416
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95743025..95745346-chr4:95749976..95751572,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10516954	0.85[JPT][hapmap]
rs11723423	0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11943082	0.81[JPT][hapmap]
rs13139957	0.80[ASN][1000 genomes]
rs13149911	0.80[JPT][hapmap]
rs17616237	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs28713768	0.88[ASN][1000 genomes]
rs3775018	0.92[JPT][hapmap]
rs4416484	1.00[CEU][hapmap];0.84[CHD][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs58150305	0.96[ASN][1000 genomes]
rs58519858	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6842016	0.96[ASN][1000 genomes]
rs6842297	0.96[ASN][1000 genomes]
rs72884143	0.82[ASN][1000 genomes]
rs72885860	0.87[ASN][1000 genomes]
rs72885868	0.87[ASN][1000 genomes]
rs72885877	0.91[ASN][1000 genomes]
rs72887821	0.82[ASN][1000 genomes]
rs73838368	0.87[ASN][1000 genomes]
rs7677261	0.81[JPT][hapmap]
rs9968534	0.85[ASN][1000 genomes]
rs997902	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv518579	chr4:95706337-95755544	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv594906	chr4:95713679-95755544	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1007391	chr4:95713679-95763860	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1002004	chr4:95717063-95755436	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv999588	chr4:95717063-95763860	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv997960	chr4:95719585-95766067	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv537188	chr4:95719585-95766067	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95747400-95751000	Enhancers	NHEK	skin
2	chr4:95748200-95750800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:95748600-95751000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:95748600-95751000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr4:95749000-95752800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:95749000-95752800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr4:95749200-95750800	Enhancers	Hela-S3	cervix
8	chr4:95749400-95751000	Enhancers	A549	lung
9	chr4:95749400-95751000	Enhancers	HMEC	breast
10	chr4:95749400-95753000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr4:95749600-95754600	Weak transcription	HUVEC	blood vessel
12	chr4:95749800-95750800	Enhancers	Stomach Mucosa	stomach
13	chr4:95749800-95752600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:95750000-95750600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr4:95750000-95754600	Weak transcription	NH-A	brain
16	chr4:95750400-95750800	Enhancers	Gastric	stomach
17	chr4:95750400-95754200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr4:95750400-95754400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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