Variant report

Variant	rs72884143
Chromosome Location	chr4:95703112-95703113
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10516954	0.87[ASN][1000 genomes]
rs11723423	0.82[ASN][1000 genomes]
rs11929751	0.87[ASN][1000 genomes]
rs11943082	0.87[ASN][1000 genomes]
rs13106939	0.87[ASN][1000 genomes]
rs13115538	0.86[ASN][1000 genomes]
rs13130042	0.88[ASN][1000 genomes]
rs13138560	0.87[ASN][1000 genomes]
rs13139957	0.86[ASN][1000 genomes]
rs13140820	0.86[ASN][1000 genomes]
rs13141292	0.84[ASN][1000 genomes]
rs13146661	0.87[ASN][1000 genomes]
rs17616237	1.00[EUR][1000 genomes]
rs28713768	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34618938	0.87[ASN][1000 genomes]
rs35070714	0.87[ASN][1000 genomes]
rs35288991	0.87[ASN][1000 genomes]
rs35965331	0.87[ASN][1000 genomes]
rs4416484	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58150305	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58519858	0.83[EUR][1000 genomes]
rs6842016	0.86[ASN][1000 genomes]
rs6842297	0.86[ASN][1000 genomes]
rs6853333	0.82[ASN][1000 genomes]
rs71601231	0.87[ASN][1000 genomes]
rs72884135	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72885830	1.00[EUR][1000 genomes]
rs72885860	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72885868	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72885877	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73838368	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7665643	1.00[EUR][1000 genomes]
rs7667095	0.87[ASN][1000 genomes]
rs7667584	0.87[ASN][1000 genomes]
rs7677261	0.87[ASN][1000 genomes]
rs7677422	0.87[ASN][1000 genomes]
rs925282	0.92[ASN][1000 genomes]
rs925283	0.92[ASN][1000 genomes]
rs955735	0.87[ASN][1000 genomes]
rs9968534	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs997902	0.87[ASN][1000 genomes]
rs997903	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95683000-95703600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:95700000-95704000	Weak transcription	A549	lung

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