Variant report

Variant	rs58519858
Chromosome Location	chr4:95767507-95767508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17022512	1.00[AMR][1000 genomes]
rs17616237	0.83[EUR][1000 genomes]
rs28713768	0.83[EUR][1000 genomes]
rs4416484	0.83[EUR][1000 genomes]
rs58150305	0.81[ASN][1000 genomes]
rs58494559	1.00[AMR][1000 genomes]
rs61150430	1.00[AMR][1000 genomes]
rs6842016	0.81[ASN][1000 genomes]
rs6842297	0.81[ASN][1000 genomes]
rs6853333	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs72884135	0.83[EUR][1000 genomes]
rs72884143	0.83[EUR][1000 genomes]
rs72885830	0.83[EUR][1000 genomes]
rs72885860	0.83[EUR][1000 genomes]
rs72885868	0.83[EUR][1000 genomes]
rs72887821	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73838368	0.83[EUR][1000 genomes]
rs7665643	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95763200-95769800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:95765600-95770200	Weak transcription	Thymus	Thymus
3	chr4:95766200-95770400	Weak transcription	Fetal Thymus	thymus
4	chr4:95767200-95768800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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