Variant report

Variant	rs17653702
Chromosome Location	chr15:38948298-38948299
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16967167	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs17575006	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs17653420	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55676440	0.82[ASN][1000 genomes]
rs56094338	0.82[ASN][1000 genomes]
rs56378506	0.82[ASN][1000 genomes]
rs72729347	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72729348	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72729349	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs72729351	0.88[ASN][1000 genomes]
rs72729355	0.82[ASN][1000 genomes]
rs72729356	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949171	chr15:38232548-39033746	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv904085	chr15:38786114-38985513	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1046994	chr15:38806163-39239014	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv525770	chr15:38816833-39084956	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1054651	chr15:38827825-39082844	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv542358	chr15:38827825-39082844	Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17653702	RASGRP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:38944400-38949200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr15:38945200-38949000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr15:38945800-38948400	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr15:38946000-38948400	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr15:38946200-38948400	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr15:38946200-38948400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr15:38946200-38949000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr15:38946400-38952400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr15:38946400-38959000	Weak transcription	Dnd41	blood
10	chr15:38947000-38948800	Enhancers	Primary T cells from cord blood	blood
11	chr15:38947000-38948800	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr15:38947600-38950400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr15:38947600-38951800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr15:38948000-38950000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr15:38948000-38950400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr15:38948000-38952000	Weak transcription	Thymus	Thymus
17	chr15:38948200-38949800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr15:38948200-38950400	Weak transcription	Fetal Thymus	thymus
19	chr15:38948200-38952200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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