Variant report

Variant	rs72729351
Chromosome Location	chr15:38962111-38962112
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10220877	0.81[ASN][1000 genomes]
rs16967167	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17653420	0.93[ASN][1000 genomes]
rs17653702	0.88[ASN][1000 genomes]
rs2088133	0.81[ASN][1000 genomes]
rs4318178	0.81[ASN][1000 genomes]
rs55676440	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56094338	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56378506	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72729347	0.88[ASN][1000 genomes]
rs72729348	0.88[ASN][1000 genomes]
rs72729349	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72729355	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72729356	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs872967	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949171	chr15:38232548-39033746	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv904085	chr15:38786114-38985513	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1046994	chr15:38806163-39239014	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv525770	chr15:38816833-39084956	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1054651	chr15:38827825-39082844	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv542358	chr15:38827825-39082844	Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:38949600-38963800	Enhancers	Primary T cells from cord blood	blood
2	chr15:38953000-38962400	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr15:38955200-38963200	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr15:38955200-38963600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr15:38956000-38964000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr15:38956000-38964800	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr15:38956200-38967600	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr15:38956800-38964000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr15:38957000-38964200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr15:38959000-38967400	Enhancers	Primary T cells fromperipheralblood	blood
11	chr15:38959400-38964800	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr15:38959800-38963600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr15:38960000-38964200	Weak transcription	Spleen	Spleen
14	chr15:38960200-38962400	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr15:38960600-38962200	Weak transcription	Primary B cells from cord blood	blood
16	chr15:38960800-38963400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr15:38960800-38964000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr15:38961000-38964400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr15:38961200-38964000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:38961400-38962600	Weak transcription	Primary hematopoietic stem cells	blood
21	chr15:38961400-38962600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr15:38961400-38963800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:38961600-38964200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr15:38961800-38963000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr15:38961800-38964000	Enhancers	Fetal Thymus	thymus
26	chr15:38961800-38965800	Enhancers	Thymus	Thymus
27	chr15:38962000-38962200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr15:38962000-38962800	Enhancers	GM12878-XiMat	blood
29	chr15:38962000-38963800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr15:38962000-38964000	Enhancers	Dnd41	blood
31	chr15:38962000-38966600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr15:38962000-38967000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr15:38962000-38967200	Enhancers	Primary B cells from peripheral blood	blood

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