Variant report

Variant	rs72729347
Chromosome Location	chr15:38954891-38954892
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16967167	0.88[ASN][1000 genomes]
rs17653420	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17653702	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55676440	0.82[ASN][1000 genomes]
rs56094338	0.82[ASN][1000 genomes]
rs56378506	0.82[ASN][1000 genomes]
rs72729348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72729349	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs72729351	0.88[ASN][1000 genomes]
rs72729355	0.82[ASN][1000 genomes]
rs72729356	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949171	chr15:38232548-39033746	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv904085	chr15:38786114-38985513	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1046994	chr15:38806163-39239014	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv525770	chr15:38816833-39084956	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1054651	chr15:38827825-39082844	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv542358	chr15:38827825-39082844	Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:38946400-38959000	Weak transcription	Dnd41	blood
2	chr15:38949400-38960400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr15:38949600-38963800	Enhancers	Primary T cells from cord blood	blood
4	chr15:38949800-38955000	Enhancers	Primary T cells fromperipheralblood	blood
5	chr15:38949800-38955800	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr15:38951600-38955000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr15:38951600-38955600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr15:38951800-38955600	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr15:38952600-38955200	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr15:38953000-38962400	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr15:38953200-38956200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr15:38953200-38956200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr15:38953600-38955600	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr15:38953600-38957000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr15:38953800-38955200	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr15:38954200-38955000	Enhancers	Primary B cells from peripheral blood	blood
17	chr15:38954400-38955000	Enhancers	Primary B cells from cord blood	blood
18	chr15:38954400-38959200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr15:38954600-38955000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr15:38954600-38955200	Enhancers	Thymus	Thymus
21	chr15:38954600-38955400	Enhancers	GM12878-XiMat	blood
22	chr15:38954800-38955000	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr15:38954800-38955000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr15:38954800-38955000	Enhancers	Fetal Thymus	thymus
25	chr15:38954800-38959000	Weak transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links