Variant report

Variant	rs72729355
Chromosome Location	chr15:38965400-38965401
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:38884733..38886472-chr15:38964127..38966669,2	MCF-7	breast:
2	chr15:38885594..38886153-chr15:38964988..38965765,2	MCF-7	breast:
3	chr15:38856351..38858304-chr15:38964775..38966576,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000172575	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16967167	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17653420	0.87[ASN][1000 genomes]
rs17653702	0.82[ASN][1000 genomes]
rs55676440	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56094338	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56378506	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72729347	0.82[ASN][1000 genomes]
rs72729348	0.82[ASN][1000 genomes]
rs72729349	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72729351	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72729356	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs872967	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949171	chr15:38232548-39033746	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv904085	chr15:38786114-38985513	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1046994	chr15:38806163-39239014	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv525770	chr15:38816833-39084956	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1054651	chr15:38827825-39082844	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv542358	chr15:38827825-39082844	Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:38956200-38967600	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr15:38959000-38967400	Enhancers	Primary T cells fromperipheralblood	blood
3	chr15:38961800-38965800	Enhancers	Thymus	Thymus
4	chr15:38962000-38966600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr15:38962000-38967000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr15:38962000-38967200	Enhancers	Primary B cells from peripheral blood	blood
7	chr15:38962200-38968600	Enhancers	Primary B cells from cord blood	blood
8	chr15:38962600-38965600	Enhancers	Primary hematopoietic stem cells	blood
9	chr15:38962800-38965800	Flanking Active TSS	GM12878-XiMat	blood
10	chr15:38963200-38965800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr15:38963600-38965800	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr15:38963800-38965600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
13	chr15:38964000-38965400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr15:38964000-38965400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:38964400-38965400	Enhancers	Duodenum Mucosa	Duodenum
16	chr15:38964400-38967000	Enhancers	Primary T cells from cord blood	blood
17	chr15:38964400-38967400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr15:38964400-38967600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr15:38964600-38966200	Enhancers	Fetal Thymus	thymus
20	chr15:38964600-38966800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr15:38964600-38967000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr15:38964600-38968200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr15:38964800-38965400	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr15:38965000-38965600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
25	chr15:38965000-38965800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr15:38965000-38967800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
27	chr15:38965200-38965400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr15:38965200-38965400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
29	chr15:38965200-38965600	Enhancers	Spleen	Spleen
30	chr15:38965200-38967200	Enhancers	Primary T killer memory cells from peripheral blood	blood
31	chr15:38965400-38965600	Enhancers	Primary T helper naive cells from peripheral blood	blood

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