Variant report

Variant	rs17696143
Chromosome Location	chr1:217326608-217326609
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10158793	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11117773	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12116777	0.96[AFR][1000 genomes]
rs12119709	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12121561	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12121769	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12122960	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12125004	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12125898	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12126433	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12133995	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12135903	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12141781	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41283142	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6674783	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7518540	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7533486	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7546014	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7550505	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217323400-217327000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:217325200-217327200	Enhancers	Fetal Heart	heart
3	chr1:217325400-217327600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr1:217326000-217326800	Weak transcription	Aorta	Aorta
5	chr1:217326600-217327000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links