Variant report

Variant	rs10158793
Chromosome Location	chr1:217309482-217309483
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:217308030..217310144-chr1:217311163..217313790,2	MCF-7	breast:
2	chr1:217235815..217237725-chr1:217308082..217309758,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11117773	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12119709	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12121561	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12121769	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12122960	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12125004	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12125898	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12126433	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12133995	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12135903	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12141781	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17696143	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41283142	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6674783	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7518540	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7533486	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7546014	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7550505	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs830304	0.82[EUR][1000 genomes]

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217307200-217311600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
2	chr1:217307200-217314200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr1:217307200-217314200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr1:217307400-217310200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:217307400-217311000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr1:217307400-217314200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
7	chr1:217307600-217309600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:217307600-217309600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
9	chr1:217307600-217309600	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
10	chr1:217307600-217310200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:217307600-217311200	Active TSS	Right Ventricle	heart
12	chr1:217307600-217311800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
13	chr1:217307800-217309600	Active TSS	Brain Anterior Caudate	brain
14	chr1:217307800-217309600	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr1:217307800-217309600	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
16	chr1:217307800-217309800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
17	chr1:217307800-217309800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
18	chr1:217307800-217309800	Active TSS	Psoas Muscle	Psoas
19	chr1:217307800-217310000	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
20	chr1:217307800-217310000	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
21	chr1:217307800-217310200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr1:217307800-217310600	Active TSS	Breast Myoepithelial Primary Cells	Breast
23	chr1:217307800-217311000	Bivalent/Poised TSS	Fetal Kidney	kidney
24	chr1:217308000-217309600	Active TSS	Right Atrium	heart
25	chr1:217308000-217309600	Bivalent/Poised TSS	HSMM	muscle
26	chr1:217308000-217310000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
27	chr1:217308000-217310200	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
28	chr1:217308000-217310800	Bivalent Enhancer	Spleen	Spleen
29	chr1:217308000-217311000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
30	chr1:217308200-217309600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
31	chr1:217308200-217309600	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr1:217308200-217309600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr1:217308400-217309600	Active TSS	Pancreatic Islets	Pancreatic Islet
34	chr1:217308400-217310000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
35	chr1:217308600-217309600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr1:217308600-217309600	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr1:217308800-217309800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr1:217308800-217310400	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
39	chr1:217309000-217309600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
40	chr1:217309000-217309800	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr1:217309200-217309600	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr1:217309200-217309600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
43	chr1:217309200-217309600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
44	chr1:217309200-217309600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
45	chr1:217309200-217309600	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr1:217309200-217309600	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
47	chr1:217309200-217309600	Bivalent Enhancer	Fetal Brain Male	brain
48	chr1:217309200-217309600	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
49	chr1:217309200-217309600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
50	chr1:217309200-217309600	Bivalent Enhancer	Ovary	ovary

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