Variant report

Variant	rs830304
Chromosome Location	chr1:217282587-217282588
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10158793	0.82[EUR][1000 genomes]
rs11117771	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11117773	0.82[EUR][1000 genomes]
rs1166352	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs1166353	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs12119709	0.82[EUR][1000 genomes]
rs12121561	0.82[EUR][1000 genomes]
rs12121769	0.82[EUR][1000 genomes]
rs12122960	0.82[EUR][1000 genomes]
rs12125004	0.82[EUR][1000 genomes]
rs12125898	0.82[EUR][1000 genomes]
rs12126433	0.82[EUR][1000 genomes]
rs12126987	0.95[EUR][1000 genomes]
rs12131437	1.00[CEU][hapmap]
rs12133995	0.82[EUR][1000 genomes]
rs12135903	0.82[EUR][1000 genomes]
rs12137803	0.90[EUR][1000 genomes]
rs12141781	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1339220	0.86[YRI][hapmap]
rs2489773	0.87[AFR][1000 genomes]
rs41283142	0.82[EUR][1000 genomes]
rs6674783	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs7518540	0.82[EUR][1000 genomes]
rs7533486	0.82[EUR][1000 genomes]
rs7546014	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs7550505	0.82[EUR][1000 genomes]
rs830309	0.87[AFR][1000 genomes]
rs830314	0.87[AFR][1000 genomes]
rs830319	0.93[YRI][hapmap];0.89[AFR][1000 genomes]
rs946435	0.86[YRI][hapmap];0.84[AFR][1000 genomes]
rs946436	0.86[YRI][hapmap];0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428610	chr1:217143317-217307243	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217280000-217283200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links