Variant report
| Variant | rs6674783 |
|---|---|
| Chromosome Location | chr1:217291250-217291251 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:217283584..217286068-chr1:217290036..217292853,4 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10158793 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11117771 | 1.00[CEU][hapmap] |
| rs11117773 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12119709 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12121561 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12121769 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12122960 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12125004 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12125898 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12126433 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12131437 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap] |
| rs12133995 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12135903 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12141781 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17696143 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs41283142 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7518540 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7533486 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7546014 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7550505 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs830304 | 1.00[CEU][hapmap];0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv428610 | chr1:217143317-217307243 | Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv441737 | chr1:217290125-217294328 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 3 | nsv514044 | chr1:217290161-217293537 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:217290200-217291400 | Weak transcription | Fetal Heart | heart |
