Variant report

Variant	rs17706299
Chromosome Location	chr11:108980817-108980818
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12795743	1.00[ASN][1000 genomes]
rs12797437	1.00[ASN][1000 genomes]
rs12800678	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12801760	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12807118	1.00[ASN][1000 genomes]
rs12807207	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12808035	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1396918	1.00[ASN][1000 genomes]
rs17633182	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17633211	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17633229	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17633258	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17706334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17706358	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17706480	1.00[ASN][1000 genomes]
rs17706512	1.00[ASN][1000 genomes]
rs1876858	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2136537	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2136538	1.00[ASN][1000 genomes]
rs34356994	1.00[ASN][1000 genomes]
rs34930115	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35335615	1.00[ASN][1000 genomes]
rs35540887	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35974851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4082792	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71475130	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938477	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv898390	chr11:108893765-109003536	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108977600-108983600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:108977800-108982600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:108977800-108982600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr11:108977800-108982800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr11:108977800-108982800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr11:108977800-108983000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr11:108977800-108983000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr11:108977800-108983000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:108977800-108983800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:108979800-108981000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr11:108979800-108981400	Enhancers	HepG2	liver
12	chr11:108980000-108981200	Enhancers	Primary hematopoietic stem cells	blood
13	chr11:108980000-108981400	Enhancers	Fetal Kidney	kidney
14	chr11:108980600-108981600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:108980800-108981200	Enhancers	Fetal Heart	heart
16	chr11:108980800-108981400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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