Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108989018..108990754-chr11:108993164..108995394,2	K562	blood:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12795743	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12797437	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12800678	1.00[ASN][1000 genomes]
rs12801760	1.00[ASN][1000 genomes]
rs12807118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12807207	1.00[ASN][1000 genomes]
rs12808035	1.00[ASN][1000 genomes]
rs1396918	1.00[ASN][1000 genomes]
rs17109177	0.88[AFR][1000 genomes]
rs17633182	1.00[ASN][1000 genomes]
rs17633211	1.00[ASN][1000 genomes]
rs17633229	1.00[ASN][1000 genomes]
rs17633258	1.00[ASN][1000 genomes]
rs17706299	1.00[ASN][1000 genomes]
rs17706334	1.00[ASN][1000 genomes]
rs17706358	1.00[ASN][1000 genomes]
rs17706480	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1876857	0.86[GIH][hapmap]
rs1876858	1.00[ASN][1000 genomes]
rs2136537	1.00[ASN][1000 genomes]
rs2136538	1.00[ASN][1000 genomes]
rs34356994	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34930115	1.00[ASN][1000 genomes]
rs35335615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35540887	1.00[ASN][1000 genomes]
rs35974851	1.00[ASN][1000 genomes]
rs4082792	1.00[ASN][1000 genomes]
rs71475130	1.00[ASN][1000 genomes]
rs7938477	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv898390	chr11:108893765-109003536	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108984200-108991000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr11:108990400-108992600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:108990400-108994800	Enhancers	Fetal Heart	heart

Quick Search: