Variant report
| Variant | rs35335615 |
|---|---|
| Chromosome Location | chr11:108989878-108989879 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:108989018..108990754-chr11:108993164..108995394,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs12795743 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12797437 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12800678 | 1.00[ASN][1000 genomes] |
| rs12801760 | 1.00[ASN][1000 genomes] |
| rs12807118 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12807207 | 1.00[ASN][1000 genomes] |
| rs12808035 | 1.00[ASN][1000 genomes] |
| rs1396918 | 1.00[ASN][1000 genomes] |
| rs17109177 | 0.88[AFR][1000 genomes] |
| rs17633182 | 1.00[ASN][1000 genomes] |
| rs17633211 | 1.00[ASN][1000 genomes] |
| rs17633229 | 1.00[ASN][1000 genomes] |
| rs17633258 | 1.00[ASN][1000 genomes] |
| rs17706299 | 1.00[ASN][1000 genomes] |
| rs17706334 | 1.00[ASN][1000 genomes] |
| rs17706358 | 1.00[ASN][1000 genomes] |
| rs17706480 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17706512 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1876858 | 1.00[ASN][1000 genomes] |
| rs2136537 | 1.00[ASN][1000 genomes] |
| rs2136538 | 1.00[ASN][1000 genomes] |
| rs34356994 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34930115 | 1.00[ASN][1000 genomes] |
| rs35540887 | 1.00[ASN][1000 genomes] |
| rs35974851 | 1.00[ASN][1000 genomes] |
| rs4082792 | 1.00[ASN][1000 genomes] |
| rs71475130 | 1.00[ASN][1000 genomes] |
| rs7938477 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1040650 | chr11:108859584-109174553 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv898390 | chr11:108893765-109003536 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:108984200-108991000 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
| 2 | chr11:108984400-108990400 | Weak transcription | Fetal Heart | heart |
