Variant report
| Variant | rs17713701 |
|---|---|
| Chromosome Location | chr7:39585308-39585309 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:39581559..39584136-chr7:39585096..39587437,2 | K562 | blood: |
(count:2 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-C7orf11-7 | chr7:39585249-39585492 | XLOC_006414 |
| 2 | lnc-C7orf11-7 | chr7:39585245-39585492 | ENSG00000227172.2 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10232859 | 1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs10262131 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs10486799 | 1.00[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs1051162 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs11971179 | 0.83[ASN][1000 genomes] |
| rs11981810 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11982805 | 0.82[ASN][1000 genomes] |
| rs11983711 | 0.82[ASN][1000 genomes] |
| rs17171592 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs17171599 | 0.91[ASN][1000 genomes] |
| rs17171601 | 0.91[ASN][1000 genomes] |
| rs17713630 | 0.82[ASN][1000 genomes] |
| rs17714026 | 0.87[ASN][1000 genomes] |
| rs17714061 | 1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs17770744 | 0.87[ASN][1000 genomes] |
| rs2288744 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs2876861 | 0.87[ASN][1000 genomes] |
| rs2971 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs35586222 | 0.96[ASN][1000 genomes] |
| rs3800852 | 1.00[CEU][hapmap] |
| rs59818431 | 0.91[ASN][1000 genomes] |
| rs60942815 | 0.91[ASN][1000 genomes] |
| rs6947660 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs6973403 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs6978059 | 0.91[ASN][1000 genomes] |
| rs73373899 | 0.82[ASN][1000 genomes] |
| rs73375667 | 0.94[ASN][1000 genomes] |
| rs73375682 | 0.91[ASN][1000 genomes] |
| rs73375684 | 0.91[ASN][1000 genomes] |
| rs73375686 | 0.91[ASN][1000 genomes] |
| rs7790984 | 0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1021180 | chr7:39424988-39642261 | Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv1026951 | chr7:39429036-39642261 | Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv1018430 | chr7:39455497-39643569 | Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
