Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:39642317..39645225-chr7:39656160..39658184,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10232859	0.90[ASN][1000 genomes]
rs10262131	0.90[ASN][1000 genomes]
rs10486799	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1051162	0.90[ASN][1000 genomes]
rs11981810	0.90[ASN][1000 genomes]
rs17171592	0.87[ASN][1000 genomes]
rs17171599	0.93[ASN][1000 genomes]
rs17171601	0.93[ASN][1000 genomes]
rs17713701	0.87[ASN][1000 genomes]
rs17714026	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17714061	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17770744	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2288744	0.93[ASN][1000 genomes]
rs2971	0.90[ASN][1000 genomes]
rs35586222	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59818431	0.93[ASN][1000 genomes]
rs60942815	0.93[ASN][1000 genomes]
rs6947660	0.90[ASN][1000 genomes]
rs6973403	0.93[ASN][1000 genomes]
rs6978059	0.93[ASN][1000 genomes]
rs73375667	0.90[ASN][1000 genomes]
rs73375682	0.93[ASN][1000 genomes]
rs73375684	0.93[ASN][1000 genomes]
rs73375686	0.93[ASN][1000 genomes]
rs7790984	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018430	chr7:39455497-39643569	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv887970	chr7:39587912-39688152	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39632600-39646000	Weak transcription	K562	blood
2	chr7:39638400-39646400	Weak transcription	Stomach Mucosa	stomach
3	chr7:39640400-39645400	Enhancers	HSMM	muscle
4	chr7:39642200-39644000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:39642200-39648200	Weak transcription	NH-A	brain
6	chr7:39642400-39644000	Weak transcription	HMEC	breast
7	chr7:39642400-39644600	Weak transcription	NHEK	skin
8	chr7:39642400-39644800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:39642400-39644800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr7:39642400-39644800	Weak transcription	HSMMtube	muscle
11	chr7:39642400-39647800	Weak transcription	NHDF-Ad	bronchial
12	chr7:39642400-39647800	Weak transcription	Osteobl	bone
13	chr7:39642400-39648000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr7:39642600-39644000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:39642600-39648600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr7:39642800-39643800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr7:39642800-39643800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr7:39642800-39644600	Weak transcription	Muscle Satellite Cultured Cells	--

Quick Search: