Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:16593627..16595980-chr20:16599044..16601255,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10485558	0.81[EUR][1000 genomes]
rs11697576	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11698735	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11699391	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17675229	0.81[EUR][1000 genomes]
rs17675340	0.81[EUR][1000 genomes]
rs17681859	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17744455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6034525	0.81[EUR][1000 genomes]
rs6034526	0.81[EUR][1000 genomes]
rs6044093	0.81[EUR][1000 genomes]
rs6044099	0.81[EUR][1000 genomes]
rs6044101	0.81[EUR][1000 genomes]
rs6044105	0.81[EUR][1000 genomes]
rs6044108	0.81[EUR][1000 genomes]
rs6044167	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6044172	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6044179	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6111185	0.81[EUR][1000 genomes]
rs62196260	0.81[EUR][1000 genomes]
rs62196283	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs62196284	0.81[EUR][1000 genomes]
rs62196286	0.81[EUR][1000 genomes]
rs62196289	0.81[EUR][1000 genomes]
rs62196304	0.81[EUR][1000 genomes]
rs62196305	0.81[EUR][1000 genomes]
rs62196307	0.81[EUR][1000 genomes]
rs62196308	0.81[EUR][1000 genomes]
rs62196310	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525956	chr20:16593159-16601519	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16590000-16602400	Weak transcription	Right Atrium	heart
2	chr20:16597000-16600800	Weak transcription	Small Intestine	intestine
3	chr20:16598400-16605600	Weak transcription	Fetal Lung	lung
4	chr20:16600000-16601200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr20:16600000-16602000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr20:16600200-16601000	Enhancers	Duodenum Mucosa	Duodenum
7	chr20:16600200-16602000	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr20:16600600-16601800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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