Variant report

Variant	rs6044093
Chromosome Location	chr20:16518502-16518503
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:16517798..16520614-chr20:16552938..16555340,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000089177	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10485558	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11697576	0.81[EUR][1000 genomes]
rs11698735	0.81[EUR][1000 genomes]
rs17675229	0.89[EUR][1000 genomes]
rs17675340	0.89[EUR][1000 genomes]
rs17744425	0.81[EUR][1000 genomes]
rs17744455	0.81[EUR][1000 genomes]
rs6034525	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6034526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6044091	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6044099	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6044101	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6044105	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6044108	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6044167	0.81[EUR][1000 genomes]
rs6044172	0.81[EUR][1000 genomes]
rs6111185	0.89[EUR][1000 genomes]
rs62196260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62196283	0.89[EUR][1000 genomes]
rs62196284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62196285	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62196286	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62196289	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62196304	0.89[EUR][1000 genomes]
rs62196305	0.89[EUR][1000 genomes]
rs62196306	0.81[EUR][1000 genomes]
rs62196307	0.89[EUR][1000 genomes]
rs62196308	0.89[EUR][1000 genomes]
rs62196310	0.89[EUR][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16485800-16521200	Weak transcription	Right Ventricle	heart
2	chr20:16489200-16521000	Weak transcription	Spleen	Spleen
3	chr20:16492600-16528800	Weak transcription	Primary B cells from cord blood	blood
4	chr20:16493000-16521200	Weak transcription	Liver	Liver
5	chr20:16497600-16521600	Weak transcription	Brain Hippocampus Middle	brain
6	chr20:16507400-16527000	Weak transcription	Primary B cells from peripheral blood	blood
7	chr20:16508000-16522000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr20:16508400-16536800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr20:16509000-16522000	Weak transcription	Aorta	Aorta
10	chr20:16509200-16553000	Weak transcription	Primary T cells from cord blood	blood
11	chr20:16509600-16521600	Weak transcription	Fetal Muscle Leg	muscle
12	chr20:16511400-16518600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr20:16511400-16519600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr20:16511400-16519800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr20:16511600-16522400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr20:16511600-16549000	Weak transcription	Colonic Mucosa	Colon
17	chr20:16514400-16522000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr20:16516600-16520000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr20:16517400-16518600	Enhancers	Psoas Muscle	Psoas
20	chr20:16517400-16520200	Enhancers	Adipose Nuclei	Adipose
21	chr20:16517400-16521000	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr20:16517600-16518600	Enhancers	Pancreas	Pancrea
23	chr20:16517600-16518800	Enhancers	Stomach Mucosa	stomach
24	chr20:16517800-16521200	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr20:16517800-16534200	Weak transcription	Esophagus	oesophagus
26	chr20:16518000-16521000	Weak transcription	Ovary	ovary
27	chr20:16518200-16518800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr20:16518200-16519400	Weak transcription	Duodenum Mucosa	Duodenum
29	chr20:16518200-16519400	Weak transcription	Fetal Intestine Small	intestine
30	chr20:16518200-16519800	Weak transcription	HepG2	liver
31	chr20:16518200-16521400	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr20:16518200-16521600	Weak transcription	Left Ventricle	heart
33	chr20:16518200-16523200	Weak transcription	Small Intestine	intestine
34	chr20:16518200-16535800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr20:16518400-16518800	Weak transcription	Lung	lung
36	chr20:16518400-16519400	Weak transcription	Fetal Intestine Large	intestine
37	chr20:16518400-16521200	Weak transcription	Right Atrium	heart
38	chr20:16518400-16521600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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